Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2268 ATGTGTGATGCGAAGGAGAAACGGGAATCTGCACAAGATGTTCCAGTTGCTTTAAGCGAAGGCATCCAAGTTATTTCAAAAGATGAGCTCTATGTTTCTCTCCTTTTTCCAGCTGAGGCAGCTTCAAACTTTTGTGAAAATAAGATTGATTCACCTGACACTCATGCAGAGGAAGTTGCACCTCCTGAGGATGATTTAGATAAACTTACGATTCCTCAGCAATCAAATCAATATTCTGCGCATTCACTTCCCTTAGATCACGACCAAGAGTTGGATAAGCTTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTAATGAGTTGTCCCCAAGGGAGTCGGGTTTAGATGCTTCCACTTCCAACACTCACCTGGAAACCGTTCAATCCTCCATGGATGTCAAATCTGAGGCCTTTGGGATGCCTGAAACTAAAATTGGTTCTCTTGATGATGCTTCAATAGCAAGTCATGATGAACCTTTAACTCCCCATCCAGTGTCATCTTATATTAAAGCCGAAACAGAAAATGCCTTAGAATTGAAAGTCAATGAAGACAGTGTTACTATACCTCATAACGGGCATTCCAAAATGAATGACTCGTTTATTTTGGATGAAAACCATATTGCTGAAGGTAGTGAATCCGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGAGAGGGGCTGAATTGCCTCAAGTTATGGAGGGCCGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTGTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCAAACTTAGTGTACCTATTGCTTCCAACTCAGATCCTATGAGTGTTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCTATGCAAGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAGGAATTGGTGGTATTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAGCATGTACAAAATCATCAAGACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGATTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTACGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGTGTTCAGTCTGATCCGGCAGGGCGCTTGGTTATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTGAGTCTACCATCAACATCAAGGATTGATCCACATCAGACCTCTGCGGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1545 43.75 MCDAKEKRESAQDVPVALSEGIQVISKDELYVSLLFPAEAASNFCENKIDSPDTHAEEVAPPEDDLDKLTIPQQSNQYSAHSLPLDHDQELDKLDAEPASDVKTGPNELSPRESGLDASTSNTHLETVQSSMDVKSEAFGMPETKIGSLDDASIASHDEPLTPHPVSSYIKAETENALELKVNEDSVTIPHNGHSKMNDSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGKLSVPIASNSDPMSVENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKGIGGILKRKKPSYMEHAMKSACTKSSRPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSTSRIDPHQTSAVVTLHGQLFVRVPFEQLE 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 74157396 74164064 + Tan0017443.1 Tan08g2268 762160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2268 514 FunFam AT-rich interactive domain-containing protein 3 404 514 - -
Tan08g2268 514 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 412 514 IPR002068 -
Tan08g2268 514 MobiDBLite consensus disorder prediction 314 338 - -
Tan08g2268 514 SMART ARID_2 214 304 - -
Tan08g2268 514 MobiDBLite consensus disorder prediction 47 69 - -
Tan08g2268 514 Pfam ARID/BRIGHT DNA binding domain 220 304 IPR001606 GO:0003677(InterPro)
Tan08g2268 514 Gene3D - 409 514 IPR008978 -
Tan08g2268 514 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 79 512 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Tan08g2268 514 FunFam AT-rich interactive domain-containing protein 3 217 316 - -
Tan08g2268 514 CDD ARID 222 304 - -
Tan08g2268 514 CDD ACD_sHsps-like 427 509 - -
Tan08g2268 514 Gene3D - 217 315 IPR036431 GO:0003677(InterPro)
Tan08g2268 514 MobiDBLite consensus disorder prediction 314 332 - -
Tan08g2268 514 SUPERFAMILY HSP20-like chaperones 423 510 IPR008978 -
Tan08g2268 514 SMART bright_3 218 309 IPR001606 GO:0003677(InterPro)
Tan08g2268 514 MobiDBLite consensus disorder prediction 50 65 - -
Tan08g2268 514 SUPERFAMILY ARID-like 212 318 IPR036431 GO:0003677(InterPro)
Tan08g2268 514 ProSiteProfiles ARID domain profile. 217 308 IPR001606 GO:0003677(InterPro)
Tan08g2268 514 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2268 Tan-Chr8:74157396 Tan11g1966 Tan-Chr11:33339943 1.80E-281 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28250 PF01388 ARID 2.40E-16 CL0123 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2268 - - - 0.0