Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2268 ATGTGTGATGCGAAGGAGAAACGGGAATCTGCACAAGATGTTCCAGTTGCTTTAAGCGAAGGCATCCAAGTTATTTCAAAAGATGAGCTCTATGTTTCTCTCCTTTTTCCAGCTGAGGCAGCTTCAAACTTTTGTGAAAATAAGATTGATTCACCTGACACTCATGCAGAGGAAGTTGCACCTCCTGAGGATGATTTAGATAAACTTACGATTCCTCAGCAATCAAATCAATATTCTGCGCATTCACTTCCCTTAGATCACGACCAAGAGTTGGATAAGCTTGATGCAGAACCTGCTTCTGATGTCAAGACTGGGCCTAATGAGTTGTCCCCAAGGGAGTCGGGTTTAGATGCTTCCACTTCCAACACTCACCTGGAAACCGTTCAATCCTCCATGGATGTCAAATCTGAGGCCTTTGGGATGCCTGAAACTAAAATTGGTTCTCTTGATGATGCTTCAATAGCAAGTCATGATGAACCTTTAACTCCCCATCCAGTGTCATCTTATATTAAAGCCGAAACAGAAAATGCCTTAGAATTGAAAGTCAATGAAGACAGTGTTACTATACCTCATAACGGGCATTCCAAAATGAATGACTCGTTTATTTTGGATGAAAACCATATTGCTGAAGGTAGTGAATCCGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGAGAGGGGCTGAATTGCCTCAAGTTATGGAGGGCCGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTGTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTACGAGAGGCATAAAACCCATGGTGGCAAACTTAGTGTACCTATTGCTTCCAACTCAGATCCTATGAGTGTTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCTATGCAAGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAGGAATTGGTGGTATTCTTAAACGTAAGAAACCATCTTACATGGAGCATGCCATGAAATCAGCATGTACAAAATCATCAAGACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGATTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTACGAGGTCTATGCATTAGTCCCCGGACTACTTCGTGAGGAGGTGCGTGTTCAGTCTGATCCGGCAGGGCGCTTGGTTATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTGAGTCTACCATCAACATCAAGGATTGATCCACATCAGACCTCTGCGGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1545 43.75 MCDAKEKRESAQDVPVALSEGIQVISKDELYVSLLFPAEAASNFCENKIDSPDTHAEEVAPPEDDLDKLTIPQQSNQYSAHSLPLDHDQELDKLDAEPASDVKTGPNELSPRESGLDASTSNTHLETVQSSMDVKSEAFGMPETKIGSLDDASIASHDEPLTPHPVSSYIKAETENALELKVNEDSVTIPHNGHSKMNDSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGKLSVPIASNSDPMSVENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKGIGGILKRKKPSYMEHAMKSACTKSSRPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSTSRIDPHQTSAVVTLHGQLFVRVPFEQLE 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 74157396 74164064 + Tan0017443.1 Tan08g2268 762160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2268 514 FunFam AT-rich interactive domain-containing protein 3 404 514 - -
Tan08g2268 514 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 412 514 IPR002068 -
Tan08g2268 514 MobiDBLite consensus disorder prediction 314 338 - -
Tan08g2268 514 SMART ARID_2 214 304 - -
Tan08g2268 514 MobiDBLite consensus disorder prediction 47 69 - -
Tan08g2268 514 Pfam ARID/BRIGHT DNA binding domain 220 304 IPR001606 GO:0003677(InterPro)
Tan08g2268 514 Gene3D - 409 514 IPR008978 -
Tan08g2268 514 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 79 512 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Tan08g2268 514 FunFam AT-rich interactive domain-containing protein 3 217 316 - -
Tan08g2268 514 CDD ARID 222 304 - -
Tan08g2268 514 CDD ACD_sHsps-like 427 509 - -
Tan08g2268 514 Gene3D - 217 315 IPR036431 GO:0003677(InterPro)
Tan08g2268 514 MobiDBLite consensus disorder prediction 314 332 - -
Tan08g2268 514 SUPERFAMILY HSP20-like chaperones 423 510 IPR008978 -
Tan08g2268 514 SMART bright_3 218 309 IPR001606 GO:0003677(InterPro)
Tan08g2268 514 MobiDBLite consensus disorder prediction 50 65 - -
Tan08g2268 514 SUPERFAMILY ARID-like 212 318 IPR036431 GO:0003677(InterPro)
Tan08g2268 514 ProSiteProfiles ARID domain profile. 217 308 IPR001606 GO:0003677(InterPro)
Tan08g2268 514 MobiDBLite consensus disorder prediction 97 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2268 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2268 Tan-Chr8:74157396 Tan11g1966 Tan-Chr11:33339943 1.80E-281 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2305 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2306 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2304 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2310 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2311 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2312 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan01g5166 . 121 417 ARID Transcription Factor Family AT1G20910 64.0 1.8e-103 373.6
Tan11g1966 . 209 480 ARID Transcription Factor Family AT1G20910 60.1 9.6e-89 324.7
Tan08g2268 . 194 491 ARID Transcription Factor Family AT1G20910 57.2 2.8e-88 323.2
Tan01g5167 . 121 386 ARID Transcription Factor Family AT1G20910 62.0 4.5e-86 315.8
Tan01g5063 . 16 309 ARID Transcription Factor Family AT1G76110 68.2 1.0e-110 397.5
Tan01g5166 . 138 447 ARID Transcription Factor Family AT1G76510 72.8 2.6e-127 453.0
Tan11g1966 . 188 510 ARID Transcription Factor Family AT1G76510 60.3 6.0e-108 388.7
Tan08g2268 . 180 512 ARID Transcription Factor Family AT1G76510 58.9 1.1e-106 384.4
Tan01g5167 . 138 386 ARID Transcription Factor Family AT1G76510 69.7 6.4e-94 342.0
Tan06g0070 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan06g0071 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan04g2843 . 2 741 ARID Transcription Factor Family AT3G43240 58.9 1.7e-248 856.3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28250 PF01388 ARID 2.40E-16 CL0123 Tan TR