Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g2273 | ATGACTCGCTATATGAGAGTTCTCGCCGCGAATACTTCGTCGGCGTCGGCACCTCCCCCTGAGGCTGTGGCCTTGGAGTCGGATTTCGTGGTGATTCTGGCGGCGCTTCTGTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGATGTGCGTGGCTCCGCCGTGGCGGTGGGGCTACGGCGAATCAAGCGTCTGCGAATAGGGGATTGAAGAAGAAGATCCTGCAATCCCTTCCGAAATTCACGTACAAAGCGTCAGGGTCGAGCGGAGAAGGGAAATTCGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCATGGAGGGGGAGGAGATCCGGCAGCTGCCGCAGTGCGGCCATTGTTTCCACGTCAGCTGCGTAGACACGTGGCTGGGTTCACACTCATCCTGCCCCTCTTGCCGGCAGATTCTGGTGGTGGCCAGATGCCAGAAGTGCGGCCAGTTTCCGGCCGTCGTCCACGGCGGCGCTCACAACAACGAGGAGGAGCAAAAGAGGAGGGAAGATAACAATGCTAACAACACGGGTTTGGGATTTTTGCCTTGA | 567 | 58.38 | MTRYMRVLAANTSSASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGGGATANQASANRGLKKKILQSLPKFTYKASGSSGEGKFAAECAICLAEFMEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVHGGAHNNEEEQKRREDNNANNTGLGFLP | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 74213920 | 74214486 | - | Tan0015507.1 | Tan08g2273 | 762165 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g2273 | 188 | CDD | RING-H2_EL5-like | 99 | 142 | - | - | |
Tan08g2273 | 188 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
Tan08g2273 | 188 | SMART | FANCL_C_2 | 96 | 150 | - | - | |
Tan08g2273 | 188 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
Tan08g2273 | 188 | SUPERFAMILY | RING/U-box | 99 | 148 | - | - | |
Tan08g2273 | 188 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 16 | 176 | IPR052788 | - | |
Tan08g2273 | 188 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 146 | IPR013083 | - | |
Tan08g2273 | 188 | FunFam | E3 ubiquitin-protein ligase ATL6 | 61 | 148 | - | - | |
Tan08g2273 | 188 | MobiDBLite | consensus disorder prediction | 164 | 188 | - | - | |
Tan08g2273 | 188 | Pfam | Ring finger domain | 99 | 142 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g4403 | Tan-Chr1:109157008 | Tan08g2273 | Tan-Chr8:74213920 | 2.20E-12 | dispersed | |
Tan01g5135 | Tan-Chr1:116655370 | Tan08g2273 | Tan-Chr8:74213920 | 1.10E-47 | dispersed | |
Tan08g2273 | Tan-Chr8:74213920 | Tan11g0332 | Tan-Chr11:2608113 | 5.00E-19 | dispersed | |
Tan08g2273 | Tan-Chr8:74213920 | Tan08g2229 | Tan-Chr8:73899418 | 7.00E-21 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g2273 | - | - | - | 0.0 |