Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2273 ATGACTCGCTATATGAGAGTTCTCGCCGCGAATACTTCGTCGGCGTCGGCACCTCCCCCTGAGGCTGTGGCCTTGGAGTCGGATTTCGTGGTGATTCTGGCGGCGCTTCTGTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGATGTGCGTGGCTCCGCCGTGGCGGTGGGGCTACGGCGAATCAAGCGTCTGCGAATAGGGGATTGAAGAAGAAGATCCTGCAATCCCTTCCGAAATTCACGTACAAAGCGTCAGGGTCGAGCGGAGAAGGGAAATTCGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCATGGAGGGGGAGGAGATCCGGCAGCTGCCGCAGTGCGGCCATTGTTTCCACGTCAGCTGCGTAGACACGTGGCTGGGTTCACACTCATCCTGCCCCTCTTGCCGGCAGATTCTGGTGGTGGCCAGATGCCAGAAGTGCGGCCAGTTTCCGGCCGTCGTCCACGGCGGCGCTCACAACAACGAGGAGGAGCAAAAGAGGAGGGAAGATAACAATGCTAACAACACGGGTTTGGGATTTTTGCCTTGA 567 58.38 MTRYMRVLAANTSSASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGGGATANQASANRGLKKKILQSLPKFTYKASGSSGEGKFAAECAICLAEFMEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVHGGAHNNEEEQKRREDNNANNTGLGFLP 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 74213920 74214486 - Tan0015507.1 Tan08g2273 762165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2273 188 CDD RING-H2_EL5-like 99 142 - -
Tan08g2273 188 SMART ring_2 100 141 IPR001841 -
Tan08g2273 188 SMART FANCL_C_2 96 150 - -
Tan08g2273 188 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Tan08g2273 188 SUPERFAMILY RING/U-box 99 148 - -
Tan08g2273 188 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 16 176 IPR052788 -
Tan08g2273 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 146 IPR013083 -
Tan08g2273 188 FunFam E3 ubiquitin-protein ligase ATL6 61 148 - -
Tan08g2273 188 MobiDBLite consensus disorder prediction 164 188 - -
Tan08g2273 188 Pfam Ring finger domain 99 142 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4403 Tan-Chr1:109157008 Tan08g2273 Tan-Chr8:74213920 2.20E-12 dispersed
Tan01g5135 Tan-Chr1:116655370 Tan08g2273 Tan-Chr8:74213920 1.10E-47 dispersed
Tan08g2273 Tan-Chr8:74213920 Tan11g0332 Tan-Chr11:2608113 5.00E-19 dispersed
Tan08g2273 Tan-Chr8:74213920 Tan08g2229 Tan-Chr8:73899418 7.00E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2273 - - - 0.0