Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2306 ATGTCGGCGGTTGAAGCTCCCCGTGGTGACCCAGACCCTGCAAATCCCAGTTCCCTGCCATTTCGCGATGCTCGTTCTTCAGCAGCTGATAGCAGCAGCGACATGTCGGTACTTGATGATTCCGACGACCAGTCGTGGCACTCGGTTTTCGACTCCACTGCTTGGGGATCTCACGGCGAGTGCCAGTTTTCCGGCGAAATAGAGGGCATTCCGGACGCTGACATGGGCCATTTCATCTTGGAATGCTCGTCGGAGGTGGATTTGGAGAGCGGGGATTTGGAGGTGAAGGTGCATTTGGGCAAGATTGAAAGAGATTGCAGAATTTGTCACTTGGAGCTTGAAAGCGGTGGAGGAAGAGATTCTGATGCTCCAATTCAGCTCGGTTGTTGCTGTCGAGGTGATTTGGGTACCGCCCATAAGCAATGTGCTGAGACTTGGTTTAAAATCAAGGGAAACACAATTTGCGAGATATGTGGGGCAACTGCACAAAATGTTGCAAGTCAACAAGTAAATGAACCAAGCAGTGCAGTTGCGGCTGCAGTAGCATCCTCAGCTTCGACAGCGCCCCTGACTTTCGTCGAGACTCGAACAATCTTTCACGGTCGACGCATTATGAACTTTCTGCTTGCTTGCATGCTTCTTGCATTTGCAATGTCCTGGCTTTTTCACTTCAAGTTAATGTCATAG 687 50.36 MSAVEAPRGDPDPANPSSLPFRDARSSAADSSSDMSVLDDSDDQSWHSVFDSTAWGSHGECQFSGEIEGIPDADMGHFILECSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGGRDSDAPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQVNEPSSAVAAAVASSASTAPLTFVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 74412886 74416593 - Tan0006991.1 Tan08g2306 762198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2306 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 171 IPR013083 -
Tan08g2306 228 PANTHER ZINC FINGER, RING-CH-TYPE 31 226 - -
Tan08g2306 228 MobiDBLite consensus disorder prediction 1 43 - -
Tan08g2306 228 SMART ringv_2 105 159 IPR011016 GO:0008270(InterPro)
Tan08g2306 228 MobiDBLite consensus disorder prediction 20 39 - -
Tan08g2306 228 ProSiteProfiles Zinc finger RING-CH-type profile. 98 165 IPR011016 GO:0008270(InterPro)
Tan08g2306 228 Pfam RING-variant domain 106 158 IPR011016 GO:0008270(InterPro)
Tan08g2306 228 SUPERFAMILY RING/U-box 103 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0855 Tan-Chr3:64748740 Tan08g2306 Tan-Chr8:74412886 6.40E-28 dispersed
Tan08g2063 Tan-Chr8:72723039 Tan08g2306 Tan-Chr8:74412886 5.70E-41 dispersed
Tan08g2306 Tan-Chr8:74412886 Tan08g2309 Tan-Chr8:74412886 3.00E-127 dispersed
Tan08g2306 Tan-Chr8:74412886 Tan08g2307 Tan-Chr8:74412886 6.80E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2306 - - - 0.0