Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g2309 | ATGTCGGCGGTTGAAGCTCCCCGTGGTGACCCAGACCCTGCAAATCCCAGTTCCCTGCCATTTCGCGATGCTCGTTCTTCAGCAGCTGATAGCAGCAGCGACATGTCGGTACTTGATGATTCCGACGACCAGTCGTGGCACTCGGTTTTCGACTCCACTGCTTGGGGATCTCACGGCGAGTGCCAGTTTTCCGGCGAAATAGAGGGCATTCCGGACGCTGACATGGGCCATTTCATCTTGGAATGCTCGTCGGAGGTGGATTTGGAGAGCGGGGATTTGGAGGTGAAGGTGCATTTGGGCAAGATTGAAAGAGATTGCAGAATTTGTCACTTGGAGCTTGAAAGCGGTGGAGGAAGAGATTCTGATGCTCCAATTCAGCTCGGTTGTTGCTGTCGAGGTGATTTGGGTACCGCCCATAAGCAATGTGCTGAGACTTGGTTTAAAATCAAGGGAAACACAATTTGCGAGATATGTGGGGCAACTGCACAAAATGTTGCAAGTCAACAAGTAAATGAACCAAGCAGTGCAGTTGCGGCTGCAGTAGCATCCTCAGCTTCGACAGCGCCCCTGACTTTCGTCGAGACTCGAACAATCTTTCACGGTCGACGCATTATGAACTTTCTGCTTGCTTGCATGCTTCTTGCATTTGCAATGTCCTGGCTTTTTCACTTCAAGTTAATGTCATAG | 687 | 50.36 | MSAVEAPRGDPDPANPSSLPFRDARSSAADSSSDMSVLDDSDDQSWHSVFDSTAWGSHGECQFSGEIEGIPDADMGHFILECSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGGRDSDAPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQVNEPSSAVAAAVASSASTAPLTFVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 74412886 | 74416593 | - | Tan0006991.4 | Tan08g2309 | 762201 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g2309 | 228 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 171 | IPR013083 | - | |
Tan08g2309 | 228 | PANTHER | ZINC FINGER, RING-CH-TYPE | 31 | 226 | - | - | |
Tan08g2309 | 228 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Tan08g2309 | 228 | SMART | ringv_2 | 105 | 159 | IPR011016 | GO:0008270(InterPro) | |
Tan08g2309 | 228 | MobiDBLite | consensus disorder prediction | 20 | 39 | - | - | |
Tan08g2309 | 228 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 98 | 165 | IPR011016 | GO:0008270(InterPro) | |
Tan08g2309 | 228 | Pfam | RING-variant domain | 106 | 158 | IPR011016 | GO:0008270(InterPro) | |
Tan08g2309 | 228 | SUPERFAMILY | RING/U-box | 103 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g2306 | Tan-Chr8:74412886 | Tan08g2309 | Tan-Chr8:74412886 | 3.00E-127 | dispersed | |
Tan08g2307 | Tan-Chr8:74412886 | Tan08g2309 | Tan-Chr8:74412886 | 6.30E-87 | dispersed | |
Tan08g2309 | Tan-Chr8:74412886 | Tan11g0240 | Tan-Chr11:1928095 | 2.50E-36 | dispersed | |
Tan08g2308 | Tan-Chr8:74412886 | Tan08g2309 | Tan-Chr8:74412886 | 6.30E-87 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g2309 | - | - | - | 0.0 |