Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2309 ATGTCGGCGGTTGAAGCTCCCCGTGGTGACCCAGACCCTGCAAATCCCAGTTCCCTGCCATTTCGCGATGCTCGTTCTTCAGCAGCTGATAGCAGCAGCGACATGTCGGTACTTGATGATTCCGACGACCAGTCGTGGCACTCGGTTTTCGACTCCACTGCTTGGGGATCTCACGGCGAGTGCCAGTTTTCCGGCGAAATAGAGGGCATTCCGGACGCTGACATGGGCCATTTCATCTTGGAATGCTCGTCGGAGGTGGATTTGGAGAGCGGGGATTTGGAGGTGAAGGTGCATTTGGGCAAGATTGAAAGAGATTGCAGAATTTGTCACTTGGAGCTTGAAAGCGGTGGAGGAAGAGATTCTGATGCTCCAATTCAGCTCGGTTGTTGCTGTCGAGGTGATTTGGGTACCGCCCATAAGCAATGTGCTGAGACTTGGTTTAAAATCAAGGGAAACACAATTTGCGAGATATGTGGGGCAACTGCACAAAATGTTGCAAGTCAACAAGTAAATGAACCAAGCAGTGCAGTTGCGGCTGCAGTAGCATCCTCAGCTTCGACAGCGCCCCTGACTTTCGTCGAGACTCGAACAATCTTTCACGGTCGACGCATTATGAACTTTCTGCTTGCTTGCATGCTTCTTGCATTTGCAATGTCCTGGCTTTTTCACTTCAAGTTAATGTCATAG 687 50.36 MSAVEAPRGDPDPANPSSLPFRDARSSAADSSSDMSVLDDSDDQSWHSVFDSTAWGSHGECQFSGEIEGIPDADMGHFILECSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGGRDSDAPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQVNEPSSAVAAAVASSASTAPLTFVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 74412886 74416593 - Tan0006991.4 Tan08g2309 762201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2309 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 171 IPR013083 -
Tan08g2309 228 PANTHER ZINC FINGER, RING-CH-TYPE 31 226 - -
Tan08g2309 228 MobiDBLite consensus disorder prediction 1 43 - -
Tan08g2309 228 SMART ringv_2 105 159 IPR011016 GO:0008270(InterPro)
Tan08g2309 228 MobiDBLite consensus disorder prediction 20 39 - -
Tan08g2309 228 ProSiteProfiles Zinc finger RING-CH-type profile. 98 165 IPR011016 GO:0008270(InterPro)
Tan08g2309 228 Pfam RING-variant domain 106 158 IPR011016 GO:0008270(InterPro)
Tan08g2309 228 SUPERFAMILY RING/U-box 103 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2309 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2306 Tan-Chr8:74412886 Tan08g2309 Tan-Chr8:74412886 3.00E-127 dispersed
Tan08g2307 Tan-Chr8:74412886 Tan08g2309 Tan-Chr8:74412886 6.30E-87 dispersed
Tan08g2309 Tan-Chr8:74412886 Tan11g0240 Tan-Chr11:1928095 2.50E-36 dispersed
Tan08g2308 Tan-Chr8:74412886 Tan08g2309 Tan-Chr8:74412886 6.30E-87 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g1608 . 72 561 C3H Transcription Factor Family AT2G31510 77.2 4.1e-230 794.7
Tan06g1609 . 72 496 C3H Transcription Factor Family AT2G31510 79.5 7.7e-213 737.3
Tan08g1189 . 4 376 C3H Transcription Factor Family AT2G31510 73.8 7.8e-173 604.4
Tan06g1608 . 55 517 C3H Transcription Factor Family AT2G31770 59.3 7.6e-169 591.3
Tan06g1609 . 55 496 C3H Transcription Factor Family AT2G31770 58.5 2.5e-159 559.7
Tan08g1189 . 4 350 C3H Transcription Factor Family AT2G31770 54.8 1.5e-111 401.0
Tan06g1608 . 55 524 C3H Transcription Factor Family AT2G31760 57.6 7.5e-166 581.3
Tan06g1609 . 55 497 C3H Transcription Factor Family AT2G31760 57.5 2.4e-156 549.7
Tan08g1189 . 4 335 C3H Transcription Factor Family AT2G31760 55.9 6.2e-112 402.1
Tan03g1266 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 1.7e-46 183.3
Tan03g1266 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 1.7e-46 183.3
Tan11g0412 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 4.2e-76 282.0
Tan11g0414 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 4.2e-76 282.0
Tan11g0413 . 1 182 C3H Transcription Factor Family AT3G02290 56.3 2.2e-48 189.9
Tan11g0415 . 1 182 C3H Transcription Factor Family AT3G02290 56.3 2.2e-48 189.9
Tan09g1394 . 1 306 C3H Transcription Factor Family AT1G11020 75.9 7.3e-135 477.6
Tan09g1395 . 1 306 C3H Transcription Factor Family AT1G11020 75.9 7.3e-135 477.6
Tan04g2886 . 33 192 C3H Transcription Factor Family AT1G50440 75.6 4.3e-68 255.4
Tan04g2888 . 33 192 C3H Transcription Factor Family AT1G50440 75.6 4.3e-68 255.4
Tan04g2887 . 33 166 C3H Transcription Factor Family AT1G50440 86.6 5.6e-68 255.0
Tan03g0105 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0106 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0107 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0108 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0109 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan03g0110 . 8 368 C3H Transcription Factor Family AT5G08750 62.0 5.0e-124 441.8
Tan01g0497 . 1 426 C3H Transcription Factor Family AT3G16090 72.6 2.4e-169 592.8
Tan10g1759 . 31 185 C3H Transcription Factor Family AT1G22510 68.4 1.6e-58 223.4
Tan11g0412 . 1 225 C3H Transcription Factor Family AT5G38895 56.2 4.1e-72 269.2
Tan11g0414 . 1 225 C3H Transcription Factor Family AT5G38895 56.2 4.1e-72 269.2
Tan02g1923 . 16 227 C3H Transcription Factor Family AT1G19310 67.3 3.6e-80 295.4
Tan03g1430 . 16 225 C3H Transcription Factor Family AT1G19310 61.2 2.0e-70 263.1
Tan10g1759 . 35 185 C3H Transcription Factor Family AT1G72175 68.9 1.3e-54 209.9
Tan02g1467 . 9 194 C3H Transcription Factor Family AT1G26800 53.2 1.7e-49 193.4
Tan10g0227 . 1 189 C3H Transcription Factor Family AT4G00335 51.1 6.2e-49 191.4
Tan10g0229 . 45 233 C3H Transcription Factor Family AT4G00335 51.1 6.2e-49 191.4
Tan10g0230 . 1 189 C3H Transcription Factor Family AT4G00335 51.1 6.2e-49 191.4
Tan10g0228 . 1 184 C3H Transcription Factor Family AT4G00335 51.4 5.8e-47 184.9
Tan10g0231 . 45 228 C3H Transcription Factor Family AT4G00335 51.4 5.8e-47 184.9
Tan10g0232 . 1 184 C3H Transcription Factor Family AT4G00335 51.4 5.8e-47 184.9
Tan03g1920 . 9 323 C3H Transcription Factor Family AT2G22120 84.2 1.9e-160 562.8
Tan09g1939 . 1 389 C3H Transcription Factor Family AT1G18470 77.6 3.0e-181 632.1
Tan09g1940 . 1 389 C3H Transcription Factor Family AT1G18470 77.6 3.0e-181 632.1
Tan11g1944 . 11 389 C3H Transcription Factor Family AT1G18470 64.3 5.2e-141 498.4
Tan11g1945 . 3 274 C3H Transcription Factor Family AT1G18470 64.4 7.6e-100 361.7
Tan11g1946 . 13 249 C3H Transcription Factor Family AT1G18470 63.8 4.5e-84 309.3
Tan11g1826 . 67 300 C3H Transcription Factor Family AT1G68200 50.8 1.6e-51 200.7
Tan06g1608 . 55 517 C3H Transcription Factor Family AT2G31770 59.3 7.6e-169 591.3
Tan06g1609 . 55 496 C3H Transcription Factor Family AT2G31770 58.5 2.5e-159 559.7
Tan08g1189 . 4 350 C3H Transcription Factor Family AT2G31770 54.8 1.5e-111 401.0
Tan06g1608 . 55 524 C3H Transcription Factor Family AT2G31760 57.6 7.5e-166 581.3
Tan06g1609 . 55 497 C3H Transcription Factor Family AT2G31760 57.5 2.4e-156 549.7
Tan08g1189 . 4 335 C3H Transcription Factor Family AT2G31760 55.9 6.2e-112 402.1
Tan01g3212 . 86 331 C3H Transcription Factor Family AT5G55970 66.0 2.5e-95 346.3
Tan03g0105 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0106 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0107 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0108 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0109 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan03g0110 . 8 368 C3H Transcription Factor Family AT5G63780 58.0 1.6e-117 420.2
Tan08g1518 . 1 424 C3H Transcription Factor Family AT3G58030 54.2 5.3e-112 402.1
Tan01g3212 . 90 396 C3H Transcription Factor Family AT4G26580 63.9 2.0e-111 399.8
Tan10g1839 . 22 167 C3H Transcription Factor Family AT4G10150 52.7 6.3e-43 171.8
Tan06g0571 . 6 252 C3H Transcription Factor Family AT3G63530 50.6 9.4e-66 247.7
Tan03g0676 . 1 467 C3H Transcription Factor Family AT5G01960 70.3 7.5e-172 600.9
Tan04g1456 . 1 483 C3H Transcription Factor Family AT5G01960 58.3 9.6e-151 530.8
Tan05g0994 . 1 155 C3H Transcription Factor Family AT2G04240 58.0 2.5e-43 172.6
Tan05g0995 . 1 155 C3H Transcription Factor Family AT2G04240 58.0 2.5e-43 172.6
Tan05g0996 . 1 155 C3H Transcription Factor Family AT2G04240 58.0 2.5e-43 172.6
Tan02g0512 . 1 149 C3H Transcription Factor Family AT2G04240 57.8 3.4e-40 162.2
Tan02g0513 . 1 149 C3H Transcription Factor Family AT2G04240 57.8 3.4e-40 162.2
Tan07g0793 . 12 243 C3H Transcription Factor Family AT5G19430 54.4 1.1e-64 244.2
Tan01g1029 . 132 581 C3H Transcription Factor Family AT5G45290 51.2 6.8e-101 365.5
Tan07g0793 . 7 243 C3H Transcription Factor Family AT5G12310 53.0 5.7e-58 221.9
Tan09g1762 . 75 366 C3H Transcription Factor Family AT5G05810 52.4 4.1e-74 276.2
Tan11g0240 . 58 216 C3H Transcription Factor Family AT5G05830 66.0 3.0e-57 219.2
Tan08g2063 . 70 230 C3H Transcription Factor Family AT5G05830 62.3 1.2e-53 207.2
Tan03g0855 . 10 156 C3H Transcription Factor Family AT5G05830 59.2 8.4e-44 174.5
Tan08g2306 . 82 228 C3H Transcription Factor Family AT5G05830 51.3 1.3e-36 150.6
Tan08g2309 . 82 228 C3H Transcription Factor Family AT5G05830 51.3 1.3e-36 150.6
Tan11g0412 . 1 226 C3H Transcription Factor Family AT5G15790 60.8 4.7e-75 278.5
Tan11g0414 . 1 226 C3H Transcription Factor Family AT5G15790 60.8 4.7e-75 278.5
Tan11g0413 . 1 182 C3H Transcription Factor Family AT5G15790 54.3 3.7e-48 189.1
Tan11g0415 . 1 182 C3H Transcription Factor Family AT5G15790 54.3 3.7e-48 189.1
Tan11g0201 . 1 272 C3H Transcription Factor Family AT3G55530 79.9 3.5e-114 408.7
Tan06g0938 . 1 275 C3H Transcription Factor Family AT1G63900 75.0 1.5e-117 419.9
Tan10g0440 . 10 393 C3H Transcription Factor Family AT2G44580 52.3 5.7e-118 421.8
Tan02g1923 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 1.7e-40 162.9
Tan03g1430 . 15 150 C3H Transcription Factor Family AT1G74990 54.3 3.0e-37 152.1
Tan01g3515 . 3 314 C3H Transcription Factor Family AT5G20910 63.5 1.0e-109 394.0
Tan01g0497 . 119 419 C3H Transcription Factor Family AT1G65040 69.3 1.6e-110 396.7
Tan03g1430 . 17 227 C3H Transcription Factor Family AT2G23780 62.6 2.7e-75 279.3
Tan02g1923 . 6 229 C3H Transcription Factor Family AT2G23780 57.4 4.9e-69 258.5
Tan08g1266 . 1 311 C3H Transcription Factor Family AT3G10810 54.8 1.1e-78 291.6
Tan07g1616 . 1 170 C3H Transcription Factor Family AT1G63840 59.0 1.9e-46 183.0
Tan06g2001 . 1 151 C3H Transcription Factor Family AT1G63840 50.6 2.7e-40 162.5
Tan11g1776 . 8 346 C3H Transcription Factor Family AT1G68070 65.3 1.5e-117 420.2
Tan11g1777 . 8 264 C3H Transcription Factor Family AT1G68070 59.9 6.9e-75 278.5
Tan01g5135 . 4 181 C3H Transcription Factor Family AT1G76410 57.1 7.6e-52 201.1
Tan08g2273 . 9 163 C3H Transcription Factor Family AT1G76410 59.3 8.1e-46 181.0
Tan02g2670 . 1 414 C3H Transcription Factor Family AT1G80400 53.8 9.9e-113 404.4
Tan08g2273 . 1 154 C3H Transcription Factor Family AT2G17450 57.4 3.0e-40 162.5
Tan06g1608 . 72 561 C3H Transcription Factor Family AT2G31510 77.2 4.1e-230 794.7
Tan06g1609 . 72 496 C3H Transcription Factor Family AT2G31510 79.5 7.7e-213 737.3
Tan08g1189 . 4 376 C3H Transcription Factor Family AT2G31510 73.8 7.8e-173 604.4
Tan03g1266 . 7 169 C3H Transcription Factor Family AT2G35910 61.8 2.3e-52 203.0
Tan08g1608 . 6 162 C3H Transcription Factor Family AT2G35910 50.9 1.2e-43 174.1
Tan03g0169 . 1 307 C3H Transcription Factor Family AT2G41980 81.8 2.8e-152 535.4
Tan03g0170 . 1 307 C3H Transcription Factor Family AT2G41980 81.8 2.8e-152 535.4
Tan01g0097 . 62 319 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.4
Tan01g0099 . 62 319 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.4
Tan01g0096 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 2.1e-128 456.1
Tan07g0667 . 27 324 C3H Transcription Factor Family AT2G41980 70.8 4.8e-128 454.9
Tan07g0668 . 27 324 C3H Transcription Factor Family AT2G41980 70.8 4.8e-128 454.9
Tan07g0669 . 27 324 C3H Transcription Factor Family AT2G41980 70.8 4.8e-128 454.9
Tan04g0539 . 31 305 C3H Transcription Factor Family AT2G41980 76.2 6.9e-127 451.1
Tan04g0542 . 40 314 C3H Transcription Factor Family AT2G41980 76.2 6.9e-127 451.1
Tan11g1557 . 47 304 C3H Transcription Factor Family AT2G41980 78.7 2.9e-125 445.7
Tan07g1074 . 48 305 C3H Transcription Factor Family AT2G41980 78.3 8.4e-125 444.1
Tan07g1076 . 48 305 C3H Transcription Factor Family AT2G41980 78.3 8.4e-125 444.1
Tan06g1742 . 43 301 C3H Transcription Factor Family AT2G41980 75.7 6.1e-123 438.0
Tan01g0098 . 3 238 C3H Transcription Factor Family AT2G41980 80.9 8.5e-117 417.5
Tan01g0100 . 3 238 C3H Transcription Factor Family AT2G41980 80.9 8.5e-117 417.5
Tan04g0540 . 31 204 C3H Transcription Factor Family AT2G41980 73.3 8.9e-74 274.6
Tan04g0541 . 31 204 C3H Transcription Factor Family AT2G41980 73.3 8.9e-74 274.6
Tan04g0543 . 40 213 C3H Transcription Factor Family AT2G41980 73.3 8.9e-74 274.6
Tan07g1075 . 48 212 C3H Transcription Factor Family AT2G41980 74.3 1.4e-71 267.3
Tan10g0887 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 5.7e-96 348.6
Tan10g0888 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 5.7e-96 348.6
Tan08g1887 . 33 329 C3H Transcription Factor Family AT3G09770 59.2 7.8e-87 318.2
Tan09g2236 . 58 371 C3H Transcription Factor Family AT3G47990 68.1 2.3e-122 436.0
Tan09g2237 . 1 314 C3H Transcription Factor Family AT3G47990 68.1 2.3e-122 436.0
Tan09g2238 . 1 314 C3H Transcription Factor Family AT3G47990 68.1 2.3e-122 436.0
Tan05g2019 . 315 592 C3H Transcription Factor Family AT3G47990 72.4 8.1e-120 427.6
Tan01g5135 . 4 186 C3H Transcription Factor Family AT1G20823 56.8 8.6e-54 207.6
Tan08g2273 . 6 163 C3H Transcription Factor Family AT1G20823 59.4 4.6e-47 185.3
Tan05g1359 . 34 403 C3H Transcription Factor Family AT3G18930 54.4 1.5e-84 310.8
Tan01g2341 . 20 235 C3H Transcription Factor Family AT5G66070 74.1 4.9e-74 275.0
Tan08g1954 . 5 270 C3H Transcription Factor Family AT5G02750 54.5 4.2e-70 262.3
Tan09g1939 . 5 467 C3H Transcription Factor Family AT1G73950 73.7 3.0e-200 695.3
Tan09g1940 . 5 442 C3H Transcription Factor Family AT1G73950 73.7 1.5e-186 649.8
Tan11g1944 . 12 467 C3H Transcription Factor Family AT1G73950 59.3 7.8e-156 547.7
Tan11g1945 . 3 352 C3H Transcription Factor Family AT1G73950 59.5 3.2e-117 419.5
Tan11g1946 . 13 327 C3H Transcription Factor Family AT1G73950 58.2 8.5e-102 368.2
Tan10g1839 . 1 155 C3H Transcription Factor Family AT1G33480 56.1 2.4e-43 173.3
Tan11g1777 . 2 246 C3H Transcription Factor Family AT2G01735 58.6 6.9e-72 268.1
Tan11g1776 . 2 244 C3H Transcription Factor Family AT2G01735 58.7 1.5e-71 266.9
Tan01g1943 . 60 272 C3H Transcription Factor Family AT2G01735 53.5 6.1e-52 201.8
Tan01g1942 . 60 269 C3H Transcription Factor Family AT2G01735 53.8 1.4e-51 200.7