Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2309 ATGTCGGCGGTTGAAGCTCCCCGTGGTGACCCAGACCCTGCAAATCCCAGTTCCCTGCCATTTCGCGATGCTCGTTCTTCAGCAGCTGATAGCAGCAGCGACATGTCGGTACTTGATGATTCCGACGACCAGTCGTGGCACTCGGTTTTCGACTCCACTGCTTGGGGATCTCACGGCGAGTGCCAGTTTTCCGGCGAAATAGAGGGCATTCCGGACGCTGACATGGGCCATTTCATCTTGGAATGCTCGTCGGAGGTGGATTTGGAGAGCGGGGATTTGGAGGTGAAGGTGCATTTGGGCAAGATTGAAAGAGATTGCAGAATTTGTCACTTGGAGCTTGAAAGCGGTGGAGGAAGAGATTCTGATGCTCCAATTCAGCTCGGTTGTTGCTGTCGAGGTGATTTGGGTACCGCCCATAAGCAATGTGCTGAGACTTGGTTTAAAATCAAGGGAAACACAATTTGCGAGATATGTGGGGCAACTGCACAAAATGTTGCAAGTCAACAAGTAAATGAACCAAGCAGTGCAGTTGCGGCTGCAGTAGCATCCTCAGCTTCGACAGCGCCCCTGACTTTCGTCGAGACTCGAACAATCTTTCACGGTCGACGCATTATGAACTTTCTGCTTGCTTGCATGCTTCTTGCATTTGCAATGTCCTGGCTTTTTCACTTCAAGTTAATGTCATAG 687 50.36 MSAVEAPRGDPDPANPSSLPFRDARSSAADSSSDMSVLDDSDDQSWHSVFDSTAWGSHGECQFSGEIEGIPDADMGHFILECSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGGRDSDAPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQVNEPSSAVAAAVASSASTAPLTFVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 74412886 74416593 - Tan0006991.4 Tan08g2309 762201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2309 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 171 IPR013083 -
Tan08g2309 228 PANTHER ZINC FINGER, RING-CH-TYPE 31 226 - -
Tan08g2309 228 MobiDBLite consensus disorder prediction 1 43 - -
Tan08g2309 228 SMART ringv_2 105 159 IPR011016 GO:0008270(InterPro)
Tan08g2309 228 MobiDBLite consensus disorder prediction 20 39 - -
Tan08g2309 228 ProSiteProfiles Zinc finger RING-CH-type profile. 98 165 IPR011016 GO:0008270(InterPro)
Tan08g2309 228 Pfam RING-variant domain 106 158 IPR011016 GO:0008270(InterPro)
Tan08g2309 228 SUPERFAMILY RING/U-box 103 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2306 Tan-Chr8:74412886 Tan08g2309 Tan-Chr8:74412886 3.00E-127 dispersed
Tan08g2307 Tan-Chr8:74412886 Tan08g2309 Tan-Chr8:74412886 6.30E-87 dispersed
Tan08g2309 Tan-Chr8:74412886 Tan11g0240 Tan-Chr11:1928095 2.50E-36 dispersed
Tan08g2308 Tan-Chr8:74412886 Tan08g2309 Tan-Chr8:74412886 6.30E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2309 - - - 0.0