Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2346 ATGGGTTTGAATCAGCCGCTGATTTTTGATGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGATGGCGGCGGCGGAAGTTGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGGAATTTGGTGAAAGTGATTTTTGGAACGAAGCTTGCAGTGCTTTTTCCGGCGATCCCTTTGGCTGTGGCGGCGGATTTTTTCAACTTTGGAAGAACATGGACATTTGGTTTGAGCTTACTTGGATTGGCCCCACTTGCGGAACGTGTCAGTTTTCTGACAGAGCAGATTGCATTCTTCACAGGGCCCACAGTTGGAGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTGATAATAGCAATGTTTGCTTTGCACCAAAACAAAGTCCATGTTTTGAAATTTTCCCTTTTGGGTTCAATTCTTTCCAATTTGCTTCTAGTCCTTGGCACCTCCCTTCTCTTTGGAGGCTTATCCAATCTCAACAAGCAACAAACTTTCAACCCACAAGTGGCAAATGTGAGCTCTGTGTTGTTGCTGTTGGGATTGCTATGCCAAATGCTGCCATTGATGTTCAAATTTGCATCACCATCAGCTAAAATCTCAACAGATTTTTCTGTGCTTGAGTTATCAAGAACTTGCAGCATCCTCATGCTCACAGCTTATATTGCTTATGTCTTCTTTCAGTTGAAAACCCACCATCAATTTTTTGATCTACCACAGGTAATTTTGATGGTTGAAAAGGAGGAAGAGGATGAAGAAGAAGAAATGGCAATAGTTGGATTTTGGAGTTCATTTGCTTGGTTGATTGGTATGACCATTGTCATTGCTGTTTTATCACAATATGTTGTGGCTACAATTGAGGATGCATCAAAATCATGGGGAGTTTCAGTGAGCTTTATAAGCATAATTGTGCTACCAATTATGGGTAATGCAGCAGAGCATGCTGGATCAATTATATTTGCTGTCAAGAACAAATTGGATATAACACTTGGGATAGCCTTGGGATCAGCAGCCCAAATTTCCCTGTTTGTGGTGCCTTTGAGTGTGATTGTTGGATGGTTTATGGGCATCAAAATGGATCTTGATTTTGGCCTCCTTGAAACAATTTCTCTTGCCTTCACAATCATCTTGACTCTCTTCACTTTACAGGATGGAAATTCACATTACATCAAAGGAGTGGTACTTTTCTTCTGCTATATAGTAATTTCTTCCTGTTTTTTTTTTTCAAACTATTTGTACACCTATGATCTTTTATCGAAAGTAAAGATGCTTTAA 1275 40.94 MGLNQPLIFDDLEINGGGETAAMAAAEVVRFGLVRDLWGNLVKVIFGTKLAVLFPAIPLAVAADFFNFGRTWTFGLSLLGLAPLAERVSFLTEQIAFFTGPTVGGLVNATCGNATELIIAMFALHQNKVHVLKFSLLGSILSNLLLVLGTSLLFGGLSNLNKQQTFNPQVANVSSVLLLLGLLCQMLPLMFKFASPSAKISTDFSVLELSRTCSILMLTAYIAYVFFQLKTHHQFFDLPQVILMVEKEEEDEEEEMAIVGFWSSFAWLIGMTIVIAVLSQYVVATIEDASKSWGVSVSFISIIVLPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIVGWFMGIKMDLDFGLLETISLAFTIILTLFTLQDGNSHYIKGVVLFFCYIVISSCFFFSNYLYTYDLLSKVKML 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 74749066 74758031 - Tan0008288.1 Tan08g2346 762238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2346 424 FunFam Vacuolar cation/proton exchanger 251 408 - -
Tan08g2346 424 Gene3D - 101 249 IPR044880 -
Tan08g2346 424 Gene3D - 252 406 IPR044880 -
Tan08g2346 424 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 34 409 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Tan08g2346 424 NCBIfam calcium/proton exchanger 55 407 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Tan08g2346 424 Pfam Sodium/calcium exchanger protein 264 403 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g2346 424 Pfam Sodium/calcium exchanger protein 71 229 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2132 Tan-Chr8:73125304 Tan08g2346 Tan-Chr8:74749066 3.70E-121 dispersed
Tan08g2346 Tan-Chr8:74749066 Tan03g0788 Tan-Chr3:64009293 5.60E-127 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2346 K07300 - csv:105436053 584.719