Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2365 ATGTCGGTCTCCGTCGCGGTTTCGAATTCGCCGGGGTTTTCCCCTTCGTCGTCGATGTTCTGCAACAAGACGTCGATCATTTCTCCAGCGCCGGAGGCTCTGACGCTGACGTTGGCTCATTTGAAGTCGTCGCAGGCTTCGTCGTCTTGCTCTTCTTCTCCTTCTTCCCCTTCTTCCCCTTTTCGGATCAGGTTTCCCAAGCCCCCTTCTGGGCTTTCCGCCGCGGCGGTGGCTTCCACTTCTTCTCCGTCATCGGCATCGTCCAACGCCATCTTGAAGAGGAAGAGACCGGCGAGGTTGGATATTCCGTTGACGCCGTTGAGTTTTGGGGCTCCGGTGTTGCCGTCGCCGTCGTCGTTCAGGGAGGTGGTGGAGGCCGAGAGAGATGGGTATTCTGTTTATTGCAAGAGAGGGAGGAGGAGAGTTGCTATGGAAGATCGGTATTCTGCTGCGGTTGATCTTGGAGGCGATTCTAAAGAGGCGTTTTTTGGTGTATTTGATGGACATGGCGGTGCAAAGGCTGCAGAATTTGCAGCAAATAACTTGGAGAAGAACGTATTGAATGAACTTGAAAGAATGACTGATAACCAGACTGATTTTGAACAAGCCATTAAACATGGCTACCTCACCACAGATTTTGATTTTCTCAAGGAAGATCAACGCGGTGGCTCATGTTGTGTAACAGCCCTGATCAAGAAAGGCAAGCTCGTGGTCTCCAACGCCGGTGACTGCCGTGCCGTTCTCAGCAGCGAGGGCGTCGCCGAGGCAATCACCTCCGACCACCGCCCGTCCCGAGAAGACGAAAGGCACCGAATCGAGTCCACGGGTGGATATGTTGATTTGTGCAATGGCGTTTGGAGAGTCCAAGGATCTCTGGCAGTGACAAGAGGAATTGGTGATGCTCACCTCAAACAATGGGTGATAGCCGAGCCAGAAACAAAGGCGATACCGATCGAGCCTCGACACGAGTTCTTGATCTTGGCCTCCGACGGATTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATTGCACATCCATTGTGTGTAGGGAATGAGAAGCCAGAGCCATTAGAGGCCTGTAAAAAGCTTGTGGAGCTATCACTTTCAAGAGGCTCAGTGGATGACATTAGTGTAGTACTAATTCAATTGGCTAACTTCATTTAA 1167 51.67 MSVSVAVSNSPGFSPSSSMFCNKTSIISPAPEALTLTLAHLKSSQASSSCSSSPSSPSSPFRIRFPKPPSGLSAAAVASTSSPSSASSNAILKRKRPARLDIPLTPLSFGAPVLPSPSSFREVVEAERDGYSVYCKRGRRRVAMEDRYSAAVDLGGDSKEAFFGVFDGHGGAKAAEFAANNLEKNVLNELERMTDNQTDFEQAIKHGYLTTDFDFLKEDQRGGSCCVTALIKKGKLVVSNAGDCRAVLSSEGVAEAITSDHRPSREDERHRIESTGGYVDLCNGVWRVQGSLAVTRGIGDAHLKQWVIAEPETKAIPIEPRHEFLILASDGLWETVSNQEAVDIAHPLCVGNEKPEPLEACKKLVELSLSRGSVDDISVVLIQLANFI 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 75004998 75006895 + Tan0015067.1 Tan08g2365 762257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2365 388 SMART PP2C_SIG_2 139 384 IPR001932 -
Tan08g2365 388 Gene3D - 131 387 IPR036457 -
Tan08g2365 388 FunFam probable protein phosphatase 2C 25 123 387 - -
Tan08g2365 388 PANTHER PROTEIN PHOSPHATASE 118 382 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan08g2365 388 MobiDBLite consensus disorder prediction 74 91 - -
Tan08g2365 388 Pfam Protein phosphatase 2C 135 377 IPR001932 -
Tan08g2365 388 ProSitePatterns PPM-type phosphatase domain signature. 162 170 IPR000222 GO:0043169(InterPro)
Tan08g2365 388 ProSiteProfiles PPM-type phosphatase domain profile. 130 384 IPR001932 -
Tan08g2365 388 SMART PP2C_4 123 382 IPR001932 -
Tan08g2365 388 CDD PP2Cc 130 384 IPR001932 -
Tan08g2365 388 MobiDBLite consensus disorder prediction 72 92 - -
Tan08g2365 388 SUPERFAMILY PP2C-like 130 385 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2119 Tan-Chr2:90674721 Tan08g2365 Tan-Chr8:75004998 4.90E-62 dispersed
Tan08g2365 Tan-Chr8:75004998 Tan11g0034 Tan-Chr11:639107 1.10E-68 dispersed
Tan08g2365 Tan-Chr8:75004998 Tan04g1322 Tan-Chr4:13953942 1.60E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2365 K17506 - csv:101207841 644.425