Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2409 ATGGTTGACAACGGTGAGGAGAAGCTTCTGGCCATGGCTCGCCACATAGCCAAGACTATGGGTCGCAACGAGTCCATGGCTGATGATATTCTTCAGATTTTTTCCAATTTCGATGCTAGGTTTTCCCTCGATAAACTGTCTGATAAAGCCGATGAGGTTGATCCCAGAAGCTCCGCCGCTTTGCAGCGTTCTCTCAAGTCTTTGGACCGCCGGATCTCTCAATATTTGGCCGCCGACCACCCGATTTGGGCGGATTCCGCCGATTCCTCTGCTTTTCTTGATGCTATCGATGAGTTGATGGCTACCATTAGAGACTGGACGCCGATGGCTAGGGATAAGACTGTTGGCACCTACCTTGCTCGCGCCGACGATCTGATGCAGCAGGCGATGTTCCGTGTAGATGAAGAGTTTCGGTCGTTGATGGAACGTGGAGGTGAGTCTTTTGAACTGACTCGCCATTTCAGGAACGGTGAGTCAACGGGCGATTTTTCCTTTGATTCTGAGGAAGATGAGGATGGTGCGGAAGGAATTCTTGGCGACGGCCTCCGGATCCCTGTGGCCCAGCCGGTGACGGACTACAACATCGTAATCGACGCGCTGCCGTCCGGGACTATCAGCGATCTCCATGAGATAGCGAAGCGCATGGTGGCGGCTGGGTTCGAGAAGGAGTGTTCTCACGCTTACAGTAGCTGCAGGAGGGAGTTCTTAGAGGAGAGTCTTTCTAGGTTGGGGTTACAGAAGCTGAGCATCGATGAAGTTCAAAAGATGCAATGGCAAGACATGGAAGAGGAGATTGAGCGCTGGATGAAAGCGATTACCGTCTCCCTTCGAATCCTCTTCCCAAGCGAACGACGGCTCTGCGAACGCGTATTCGTCGGCCTCTCCTCCGCCGCTGACCTCTCTTTCATGGAGGTCTGCCGAGGATCCACGATTCAGCTACTGAATTTTGCAGATGCGGTCGCAATTGGCTCGCGAGCACCGGAACGACTGTTCAAAATCCTCGATATGTTCGAGACCTTGAGAGACTTAATGCCAGAGTTCGATTCCGTATTTTCGGACCAGTACTGCTTGTTGCTTAGAAATGAAGCAATTACAATCTGGAAAAGGTTAGGCGGAACAATCAAGGGGATCTTCATGGAGCTTGAGAATTTGATCCGTCGTGATCCGGCTAAAACTCCGGTGCCGGGTGGCGGGCTTCATCCAATTACTCGATATGTGATGAATTACCTTAAAGCCGCCTGTAAATCGCGACAGACTCTGGAGCAAGTTTTCGAAGAAGCCGCTCTTCCCTCTCAGGATTACACCAAGCTCGAGGACAGAGCTGCAGCATCATCTTCGTTATCAGTTCAAATGGACTGGATCATGGAGCTTTTAGAGAGCAATTTAGAAGCAAAGTCGAAGATATACAAGGATCTTTCCTTAAGCTCTGTGTTTCTGATGAACAATGGCCGATACATTGTTCAGAAAGTGAAAGACAGTGAATTAGGATCAGTTTTAGGCGACAATTGGATTCGAAAGCACTCGGTTAAAAGCCGCCAATACCTCGGGAATTACCTGAAAAGCTCATGGAGCAAGGTGGTCGGAGTATTGAAAATGGACAGTGGCTCTTTAGCTCCGGCTGTAATGAAAGAGAAGCTCAAATCATTCAATGCGCAGTTCGAAGAAATCTGCCAATCGCAATCTACATGGGTGATATTCGAGCATCAGCTTAGAGAAGAAGCAAGAATCTCAGTTGCCAAAATCCTCCTGCCGGCATATCAAAATTTCATCGGAAGGTACCAGAGTTTGCCGGAGCTAGCAAAGCGTACAGACCGGTATTTGAAGTACACGGCGGAGGATGTGGAGGCTCAGATCACCGAGCTGTTCGAAGGCAGTGGCAGCGGCGGAAGGAGGTAA 1896 49.84 MVDNGEEKLLAMARHIAKTMGRNESMADDILQIFSNFDARFSLDKLSDKADEVDPRSSAALQRSLKSLDRRISQYLAADHPIWADSADSSAFLDAIDELMATIRDWTPMARDKTVGTYLARADDLMQQAMFRVDEEFRSLMERGGESFELTRHFRNGESTGDFSFDSEEDEDGAEGILGDGLRIPVAQPVTDYNIVIDALPSGTISDLHEIAKRMVAAGFEKECSHAYSSCRREFLEESLSRLGLQKLSIDEVQKMQWQDMEEEIERWMKAITVSLRILFPSERRLCERVFVGLSSAADLSFMEVCRGSTIQLLNFADAVAIGSRAPERLFKILDMFETLRDLMPEFDSVFSDQYCLLLRNEAITIWKRLGGTIKGIFMELENLIRRDPAKTPVPGGGLHPITRYVMNYLKAACKSRQTLEQVFEEAALPSQDYTKLEDRAAASSSLSVQMDWIMELLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKDSELGSVLGDNWIRKHSVKSRQYLGNYLKSSWSKVVGVLKMDSGSLAPAVMKEKLKSFNAQFEEICQSQSTWVIFEHQLREEARISVAKILLPAYQNFIGRYQSLPELAKRTDRYLKYTAEDVEAQITELFEGSGSGGRR 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 75341689 75344180 + Tan0003371.1 Tan08g2409 762301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2409 631 PANTHER EXOCYST COMPLEX PROTEIN EXO70 63 625 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Tan08g2409 631 Pfam Exo70 exocyst complex subunit C-terminal 267 620 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Tan08g2409 631 Gene3D Exocyst complex component Exo70 82 630 - -
Tan08g2409 631 FunFam Exocyst subunit Exo70 family protein 76 629 - -
Tan08g2409 631 Pfam Exocyst complex component Exo70 N-terminal 86 142 - -
Tan08g2409 631 SUPERFAMILY Cullin repeat-like 83 623 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2409 K07195 - - csv:101204511 1124.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2361 Tan-Chr5:74963276 Tan08g2409 Tan-Chr8:75341689 7.30E-69 dispersed
Tan08g2409 Tan-Chr8:75341689 Tan09g2370 Tan-Chr9:73415933 1.40E-110 dispersed
Tan08g2409 Tan-Chr8:75341689 Tan05g2961 Tan-Chr5:81690153 4.80E-114 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0719 . 10 653 EXO70 exocyst subunit family AT5G03540 76.1 2.5e-283 971.8
Tan03g1260 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 9.7e-267 916.8
Tan04g2073 . 9 303 EXO70 exocyst subunit family AT5G03540 59.5 2.4e-108 390.6
Tan03g1260 . 1 638 EXO70 exocyst subunit family AT5G52340 79.6 3.8e-297 1017.7
Tan04g0719 . 12 653 EXO70 exocyst subunit family AT5G52340 73.7 4.0e-270 927.9
Tan04g2073 . 4 303 EXO70 exocyst subunit family AT5G52340 59.9 1.3e-116 417.9
Tan03g0677 . 1 130 EXO70 exocyst subunit family AT5G52340 51.2 4.0e-44 177.2
Tan03g1260 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.3e-174 610.5
Tan04g0719 . 147 653 EXO70 exocyst subunit family AT5G52350 59.3 1.4e-165 580.5
Tan08g2409 . 1 628 EXO70 exocyst subunit family AT5G58430 67.2 9.4e-248 853.6
Tan08g2409 . 1 627 EXO70 exocyst subunit family AT1G07000 52.0 4.2e-176 615.5
Tan10g1341 . 59 672 EXO70 exocyst subunit family AT5G13150 53.3 1.5e-174 610.5
Tan11g1421 . 141 712 EXO70 exocyst subunit family AT5G13150 50.2 2.2e-162 570.1
Tan11g1421 . 114 713 EXO70 exocyst subunit family AT5G13990 53.1 7.4e-185 644.8
Tan04g2865 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 2.3e-217 752.7
Tan04g2865 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 1.6e-210 729.9
Tan04g2865 . 9 608 EXO70 exocyst subunit family AT3G14090 64.8 1.2e-221 766.9
Tan05g2961 . 16 652 EXO70 exocyst subunit family AT5G50380 65.0 1.8e-236 816.2
Tan09g2370 . 14 651 EXO70 exocyst subunit family AT5G50380 62.7 2.2e-229 792.7
Tan02g2612 . 13 669 EXO70 exocyst subunit family AT4G31540 71.9 9.9e-283 969.9
Tan04g0347 . 20 621 EXO70 exocyst subunit family AT3G55150 50.6 1.7e-156 550.4
Tan04g0347 . 24 613 EXO70 exocyst subunit family AT2G39380 51.2 1.2e-157 554.3
Tan08g1964 . 26 631 EXO70 exocyst subunit family AT3G09520 55.4 1.2e-178 624.0
Tan05g0340 . 16 600 EXO70 exocyst subunit family AT5G59730 50.6 7.8e-157 551.6