Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2412 ATGGCCTCCTCTTCCGGGAGCTTAGAAACATCTGCTAATTCTCATCCTTCTTTCACTTTCTCCACTCATCCTTTTATGTCTACTTCTTACTCTGACCTTCTGGCCTCCGGCAGCAACGACCCCCCTTCTTCCGCTGCCGTCCACGGTGGTCACCGGGGTTCCGGAACAGGAGTTCCTAAATTCAAATCCATCCCTCCTCCTTCTCTCCCTCTGTCTCCGCCTCCTCTCTCTCCTTCTTCCTTTTTTGCCATTCCTCCTGGATTGAGTCCGGCCGAGCTTCTTGATTCCCCTGTTCTACTCAGTGCTTCTCACGTTCTGCCGTCGCCTACCACCGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCAGGGTACATCAAAGAAGAGAACAAATACTTGTCGAATTTCTCATTTCAAACTCAATCGTCTAAGCCGCCGACATCTTTTCAGCCTTCATCCACCACAGCTCCGACGACTCAGGGATGGAGTTTTCAAGAACAGGGAAAGAAACAGGACGGATTTTCGTCGGAGAAGAATATGGTGAAGCCGGAGTACGGATCGATGCAGAGCTTCTCACCGGAATATGGGATTGTTCAAAACCAGAGCCAAAACAACGGCGGAGGGGAGTTGCAGTCCGACTACGGGAACAATTACCCGCAACAATCTCAGACAGTGAACCGGAGGTCCGATGACGGGTACAACTGGAGAAAATACGGCCAAAAACAGGTCAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAATTGCCCAACGAAGAAGAAGGTCGAAAGATCCTTGGATGGACAGATCACAGAGATCGTTTACAAAGGCAGCCATAACCATCCGAAGCCCCAATCAACAAGGAGGTCATCGTTGTCGTCGGCCGGTTCTTCCCACGCCATGGCGGCTTCAAATCCAACCGCCAACGACATGGCGGACCAGTCATTCATAACCCAAGGAAGCGGCCAATACGACAGCGTCGCAACGCCAGAGAATTCGTCGATCTCAATCGGGGACGAGGACTTCGATAGGAGCTCTCAGAAGAGCAAATCCGGAGGAGACGATTTCGATGAGGAGGAACCAGAGGCTAAGAGATGGCGAAGGGATGGTGACAACAGTGAAGGGATATCTGCAGCAGGTAGCCGGACGGTGAGAGAGCCGAGAGTGGTGGTCCAAACGACAAGCGACATCGACATTCTGGACGACGGTTACCGGTGGAGGAAGTACGGGCAGAAAGTGGTGAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGCACAAACCCAGGATGTCCAGTAAGAAAGCATGTAGAGAGAGCTTCACATGATCTAAGAGCAGTGATCACAACCTACGAAGGCAAACACAACCACGACGTCCCACCGGCACGTGGCAGTGGAAGCCATTCCCTAAACCGTCCATTCCCCAACAACGAACCACCGGCCACCGCAATCCGGCCATCGCCAAACAACCAACAAGCAGCACATGCACCATTCACACTGGAAATGGTGCAAAATCCAAATGGATTTTCATTCCCAGAATTTGGAAACTCCATCGGAATTGGACCCTACATCAACCAAACACAATCCAACGACAATTTGTTCACTAGAGCCAAAGAAGAGCCAAGGGACCATGACATCTTCATCCAATCTCTCCTATGTTGA 1680 50.77 MASSSGSLETSANSHPSFTFSTHPFMSTSYSDLLASGSNDPPSSAAVHGGHRGSGTGVPKFKSIPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYIKEENKYLSNFSFQTQSSKPPTSFQPSSTTAPTTQGWSFQEQGKKQDGFSSEKNMVKPEYGSMQSFSPEYGIVQNQSQNNGGGELQSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHAMAASNPTANDMADQSFITQGSGQYDSVATPENSSISIGDEDFDRSSQKSKSGGDDFDEEEPEAKRWRRDGDNSEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLNRPFPNNEPPATAIRPSPNNQQAAHAPFTLEMVQNPNGFSFPEFGNSIGIGPYINQTQSNDNLFTRAKEEPRDHDIFIQSLLC 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 75363300 75366473 - Tan0005993.1 Tan08g2412 762304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2412 559 FunFam WRKY transcription factor 33 393 459 - -
Tan08g2412 559 MobiDBLite consensus disorder prediction 343 378 - -
Tan08g2412 559 MobiDBLite consensus disorder prediction 31 82 - -
Tan08g2412 559 MobiDBLite consensus disorder prediction 140 390 - -
Tan08g2412 559 Gene3D WRKY domain 218 291 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2412 559 MobiDBLite consensus disorder prediction 286 342 - -
Tan08g2412 559 Gene3D WRKY domain 393 459 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2412 559 MobiDBLite consensus disorder prediction 459 497 - -
Tan08g2412 559 SUPERFAMILY WRKY DNA-binding domain 230 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2412 559 ProSiteProfiles WRKY domain profile. 232 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2412 559 FunFam WRKY transcription factor 222 291 - -
Tan08g2412 559 MobiDBLite consensus disorder prediction 140 172 - -
Tan08g2412 559 MobiDBLite consensus disorder prediction 184 231 - -
Tan08g2412 559 ProSiteProfiles WRKY domain profile. 401 466 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2412 559 SUPERFAMILY WRKY DNA-binding domain 398 466 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2412 559 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 156 488 IPR044810 GO:0003700(InterPro)
Tan08g2412 559 MobiDBLite consensus disorder prediction 63 81 - -
Tan08g2412 559 Pfam WRKY DNA -binding domain 407 464 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2412 559 Pfam WRKY DNA -binding domain 232 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2412 559 SMART WRKY_cls 231 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2412 559 SMART WRKY_cls 406 465 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1942 Tan-Chr8:71584308 Tan08g2412 Tan-Chr8:75363300 4.80E-53 dispersed
Tan08g2412 Tan-Chr8:75363300 Tan09g0604 Tan-Chr9:52184701 2.80E-65 dispersed
Tan01g1807 Tan-Chr1:19357209 Tan08g2412 Tan-Chr8:75363300 1.90E-72 transposed
Tan02g0456 Tan-Chr2:4293249 Tan08g2412 Tan-Chr8:75363300 6.10E-60 transposed
Tan08g2202 Tan-Chr8:73633887 Tan08g2412 Tan-Chr8:75363300 6.20E-90 transposed
Tan09g1563 Tan-Chr9:67511805 Tan08g2412 Tan-Chr8:75363300 9.50E-41 transposed
Tan05g0530 Tan-Chr5:3678941 Tan08g2412 Tan-Chr8:75363300 2.10E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28261 PF03106 WRKY 3.40E-25 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2412 K13424 - csv:101207158 957.592