Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2440 ATGGCCTCCAACCGCTGCATGAACACTTCTTGCGGAGCCGCCACGCCGCACGACTGGACCAAAGGATGGCCCCTGGGATCCGCCGGATTCGCACATCTCTGCCTCAACTGCGGATCTGCTTATGAAAATTTAGTCTTCTGTGATACGTATCACTTAGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATCCACTGTGGATGTATAGCCTCTAAGTCTATGTTCGAGTGTCTGGATTATGGAGGTATTGGGTGTACTAGCTGCGTGAAAAGAATTCAACTTGATGGGATCCGGAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTAATGTTGGCCTTCTACAACCTGCTTTGGTTGAGGATCGGCTAGTTCGAAATGGCATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAAAGCGACCATTTTCAGCAATCTCAAAGAGTTGATAGAAGTACATCTCCTGCACAAAAGAAAGGAGAAAATCTCAGGAGCCCATTTGGGGAAGTTGGAACAAGCTTCTTTAATATGACTAAACTACCTGTTAAATGCCAGCCATCTGTTGGTTCAATAACGTATTCCAAACTAGATACTAGCAGATCACACTTAGAACTGAAAGATATGCAAGAATCTCTAAGTCACCCATCGTTAAATATAACTTTGGGAGTTCCATTAGGTACACCGAACTTTGTGGTACCCTTTTCAGGAAGTGCAGCTGAAGAGGATGAAAAGAGTATTCTTCCATTTCAACAGGGCCAAAGATCTCGTCCAATTTTTCCCAAGCCCTTAAAAACCGGGACCACAGTTAATTCAGAAACAAGAAAGGGAATGGCTCCTCTGGTGCGTATTGCTCGTCCACCTGCTGAAGGTCGGGGCAAGAACCAACTTCTTCCGAGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGTTGAGTGCTAGTGACGCTGGTCGAATTGGTCGTTTGGTTCTGCCAAAAGCATGCGCTGAAGCATATTTCCCCCCTATCTCTCAATCAGAGGGTCTTCCTGTTAGGATTCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTTTGGAGGGTGTTACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCCACGAATATACAGGATGCCAAGATCCCTACACTTTCTAATGGCTCTCATTTGGGTGATGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAGGAGCTGAAGGAGATATTAGTTTGCATAAAATTGAAAATTTTGGGGGGAGGACAAATGATGCTTCAGGACAACAACCAGTGTTAACCATGGAGAAGAAAGGGGCTCGAAACATTGGGTCTAAAAATAAGAGGTTGCTCATGCACAGTGAAGATGCTTTGGAGTTAAGACTCACATGGGAAGAAGCTCAAGATCTACTCCGGCCTCCGCCAAGTGCAAACCCCACCATCGTCACTATCGACGACCATGAATTTGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGTCCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGACTTGTTCGGATAATGTTTGGGATTTGAGCAGGTGTACATGTTCCGCACCAGAAGAGATCAGCACAAAGGAACAGGAGAATCTTCTAAGAGCGAGTAAAGAAGTTTGTCGAGAGTGA 1920 44.48 MASNRCMNTSCGAATPHDWTKGWPLGSAGFAHLCLNCGSAYENLVFCDTYHLEETGWRDCSFCGKRIHCGCIASKSMFECLDYGGIGCTSCVKRIQLDGIRRDEISNGFDAVTVGNVGLLQPALVEDRLVRNGINEEKLLQLCNIMEANESDHFQQSQRVDRSTSPAQKKGENLRSPFGEVGTSFFNMTKLPVKCQPSVGSITYSKLDTSRSHLELKDMQESLSHPSLNITLGVPLGTPNFVVPFSGSAAEEDEKSILPFQQGQRSRPIFPKPLKTGTTVNSETRKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTNIQDAKIPTLSNGSHLGDASFSGVFQNLPLGAEGDISLHKIENFGGRTNDASGQQPVLTMEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWVQCDDCSKWRRLPVDVLLPPKWTCSDNVWDLSRCTCSAPEEISTKEQENLLRASKEVCRE 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 75585057 75600119 - Tan0014424.1 Tan08g2440 762332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2440 639 ProSiteProfiles B3 DNA-binding domain profile. 335 436 IPR003340 GO:0003677(InterPro)
Tan08g2440 639 Pfam B3 DNA binding domain 335 434 IPR003340 GO:0003677(InterPro)
Tan08g2440 639 MobiDBLite consensus disorder prediction 153 175 - -
Tan08g2440 639 FunFam B3 domain-containing transcription repressor VAL1 313 440 - -
Tan08g2440 639 SMART B3_2 335 435 IPR003340 GO:0003677(InterPro)
Tan08g2440 639 Gene3D - 313 440 IPR015300 -
Tan08g2440 639 CDD B3_DNA 333 434 IPR003340 GO:0003677(InterPro)
Tan08g2440 639 MobiDBLite consensus disorder prediction 153 171 - -
Tan08g2440 639 SUPERFAMILY DNA-binding pseudobarrel domain 332 436 IPR015300 -
Tan08g2440 639 ProSiteProfiles Zinc finger CW-type profile. 573 623 IPR011124 GO:0008270(InterPro)
Tan08g2440 639 Gene3D - 570 622 - -
Tan08g2440 639 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 636 - -
Tan08g2440 639 Pfam CW-type Zinc Finger 578 621 IPR011124 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2440 Tan-Chr8:75585057 Tan11g1474 Tan-Chr11:13450125 1.30E-15 dispersed
Tan08g2440 Tan-Chr8:75585057 Tan08g2441 Tan-Chr8:75585057 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28263 PF02362 B3 2.30E-16 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2440 K09287 - csv:101214226 1034.63