Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2442 ATGGATCTTCTCCTGTTGGAAAAGGCTCTGCTGGGGGTTTTCGTGGCCATGGTTGTTGCTATTACCACATCCAAGCTCAGGGGAAAGCGTTTTAAACTCCCACCAGGTCCCATCCCCATACCCATATTTGGAAATTGGTTGCAGGTGGGTGATGACTTGAACCACCGCAACCTGACGGAGCTAGCCAAAAGGTTTGGGGACATATTGTTGCTAAGAATGGGGCAACGGAATCTAGTGGTGGTTTCTTCCCCAGAGTTGGCCAAGGAAGTACTACACACCCAGGGAGTTGAATTTGGGTCCAGGACCAGGAACGTGGTGTTCGACATATTCACGGACAAGGGTCAAGACATGGTGTTCACTGTATACGGTGAGCACTGGAGGAAAATGAGACGAATCATGACCGTCCCTTTTTTCACAAACAAGGTGGTGCAACAAAATAGGTTCGGTTGGGAGGAGGAGGCTGCCAGAGTTGTGGAGGATCTGAAGAACAATCCAGAGGCTTCCACCACCGGGGTGGTTCTAAGGAGGCGCCTACAACTTTTGATGTATAACAATATGTACAGGATCATGTTTGACCGGAGATTCGACAGCATGGAGGACCCTCTGTTCAACAAGCTCAAGCTTATAAACGCAGAGAGGAGTCGATTGTCTCAGAGCTTTGAATACAACTACGGCGATTTCATCCCTATACTCAGGCCTTTTTTGAGAGGGTATTTAAATGTGTGTAAGGACGTCAAGGAGAGGAGGCTTAAGCTCTTTAAGGACCATTTTGTCGATGAGAGGAGGAGACTGACAAATATGATGAGCAACAAGGAGAATGGTGTAAAATGTGCCATCGATCATATTGTGGAGGCTCAGGAGAATGGTGAAATCAACGAAGATAATGTTCTTTTCATTGTTGAGAACATCAATGTTGCCGCCATTGAGACAACATTGTGGTCGATGGAGTGGGCTATTGCTGAGCTTGTGAACCACCCCAACATCCAGAAAAAGCTAAGGGACGAGCTTGACTCGGTGCTCGAAAATGGCGTCCAGATTACAGAGCCCGACATTCGCAATCTACCTTATCTGCAAGCTGTTATCAAAGAAACCATGCGACTAAGAATGGCCATTCCTCTCCTAGTTCCTCACATGAACCTCCAAGATGCCAAGTTGGCTGGTTACGACATCCCTGCCGAGAGCAAGATTCTAGTGAATGCATGGTGGTTGGCCAACAACCCTGATCACTGGAACAAACCCCACGAATTCCAACCTGAGAGGTTCTTGGAGGAGGAGGCTAATGTGGAGCCCAGCGGGAACGACTTCAGATATCTTCCCTTTGGTGCCGGGAGGAGGAGTTGTCCCGGCATTGTTCTTGCCTTGCCCATCGTTGCTATTACTTTGGGTCGTCTCATTCAAAATTTTGAGCTTTTGCCTCCTCCTGGACAATCAAAGATTGATACCACCGAAAAGCCTGGACAGTTTAGCCTACAAATATTGAACCACTCCACTATTGTGGCAAAGCCAAGGTCCTTGTAA 1518 47.76 MDLLLLEKALLGVFVAMVVAITTSKLRGKRFKLPPGPIPIPIFGNWLQVGDDLNHRNLTELAKRFGDILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTDKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNRFGWEEEAARVVEDLKNNPEASTTGVVLRRRLQLLMYNNMYRIMFDRRFDSMEDPLFNKLKLINAERSRLSQSFEYNYGDFIPILRPFLRGYLNVCKDVKERRLKLFKDHFVDERRRLTNMMSNKENGVKCAIDHIVEAQENGEINEDNVLFIVENINVAAIETTLWSMEWAIAELVNHPNIQKKLRDELDSVLENGVQITEPDIRNLPYLQAVIKETMRLRMAIPLLVPHMNLQDAKLAGYDIPAESKILVNAWWLANNPDHWNKPHEFQPERFLEEEANVEPSGNDFRYLPFGAGRRSCPGIVLALPIVAITLGRLIQNFELLPPPGQSKIDTTEKPGQFSLQILNHSTIVAKPRSL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 75602093 75604046 - Tan0020989.1 Tan08g2442 762334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2442 505 Gene3D Cytochrome P450 19 496 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 SUPERFAMILY Cytochrome P450 34 503 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 FunFam Trans-cinnamate 4-monooxygenase 23 497 - -
Tan08g2442 505 CDD CYP73 63 496 - -
Tan08g2442 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Tan08g2442 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 504 - GO:0004497(PANTHER)|GO:0009808(PANTHER)|GO:0016710(PANTHER)
Tan08g2442 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Tan08g2442 505 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0916 Tan-Chr8:12958310 Tan08g2442 Tan-Chr8:75602093 1.60E-179 dispersed
Tan08g0917 Tan-Chr8:12964404 Tan08g2442 Tan-Chr8:75602093 7.60E-182 dispersed
Tan08g2442 Tan-Chr8:75602093 Tan05g1935 Tan-Chr5:68128712 3.60E-64 dispersed
Tan05g0546 Tan-Chr5:3856036 Tan08g2442 Tan-Chr8:75602093 7.40E-251 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2442 K00487 - csv:101208511 937.562