Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0027 ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTCGGCCGCAAAATCGCAATCGATGCAAGCATGAGTATTTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGACGGAAAGCCTCCCGATTTGAAAAAACAAGAACTTGCAAAACGTTTCTCAAAGAGAGCAGATGCTACTGAAGACCTGGCAGATGCAATCGAGGTTGGCAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTGAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCCGTGCTTTGCAAGTTAGGAAAGGCAAGTACCCCTCTCCTGCATGATAATGCTTCTTTTGTTTCTTGA 561 45.45 MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRFSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAVLCKLGKASTPLLHDNASFVS 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1281830 1283248 - Tan0016661.1 Tan09g0027 762370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0027 186 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Tan09g0027 186 Gene3D - 2 185 - -
Tan09g0027 186 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 173 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
Tan09g0027 186 CDD PIN_FEN1 4 173 - -
Tan09g0027 186 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Tan09g0027 186 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Tan09g0027 186 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Tan09g0027 186 FunFam Flap endonuclease 1 1 185 - -
Tan09g0027 186 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Tan09g0027 186 SUPERFAMILY PIN domain-like 2 174 IPR029060 -
Tan09g0027 186 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Tan09g0027 186 Pfam XPG I-region 150 174 IPR006086 GO:0004518(InterPro)
Tan09g0027 186 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1329 Tan-Chr7:62336389 Tan09g0027 Tan-Chr9:1281830 7.10E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0027 K04799 - csv:101204273 335.109