Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0041 ATGACAAGGAAGAAGGTGAAATTGGCTTACATTGCGAATGACTCTGCAAGAAAAGCGACATTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAAGTGAGTGAATTGAGCACTCTTTGTGGGATTGAAGCTTGTGCAATCGTGTTTAGTCCCTACGATTCTCAGCCTGAGCTCTGGCCTTCCGCCATTGGAGTCCAACGTGTTCTTTCTCAGTTCAAGAAAATGCCTGAGATGGAGCAGAGCAAGAAGATGGTGAATCAAGAGACATTTCTACGACAAAGAATTGCAAAAGCAAACGAGCAATTAAAGAAGATGAGAAAAGATAATCGTGAGAAAGAGATCACGCGGCTGATGTTCCAAAGCCTGACCGGAGCGAAAGGGTTGCAAGCTCTCAACATGGTGGATTTGAACGACCTCGGTTGGCTCATCGATCAGAACTTAAAAGACATCACCAAACGCATAGACTCTCTTAGAAAGCCGCCACCACAGATCACTCAGCCGCTGCCGCCCCCGCCTCAGCCTCAGCCTCAGCCTCAGCCGCCACAGACGGCGGCGTGGCTGATGGAGCTGGTGAGCCCTCAGGATCAGATGGGGTTCGTTGGAGATGATATGCTTTTGCCTTTTGGAGATCATAGCTATAACAACCATAATGCCGCCATGTGGTCTAATGCCTTTTTCCCTTAG 681 48.31 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSAIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTGAKGLQALNMVDLNDLGWLIDQNLKDITKRIDSLRKPPPQITQPLPPPPQPQPQPQPPQTAAWLMELVSPQDQMGFVGDDMLLPFGDHSYNNHNAAMWSNAFFP 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1995565 1996334 - Tan0001673.1 Tan09g0041 762384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0041 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan09g0041 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan09g0041 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan09g0041 226 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan09g0041 226 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan09g0041 226 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Tan09g0041 226 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Tan09g0041 226 Coils Coil 87 114 - -
Tan09g0041 226 MobiDBLite consensus disorder prediction 161 180 - -
Tan09g0041 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan09g0041 226 Gene3D - 13 115 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan09g0041 226 MobiDBLite consensus disorder prediction 156 180 - -
Tan09g0041 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 162 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan09g0041 226 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1851 Tan-Chr5:63208972 Tan09g0041 Tan-Chr9:1995565 2.50E-65 dispersed
Tan08g1610 Tan-Chr8:65473678 Tan09g0041 Tan-Chr9:1995565 9.00E-36 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28267 PF00319 SRF-TF 6.60E-19 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0041 - - - 0.0