Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0076 ATGGTTTGTGAAGAAGAAGCTCTAATCCAAAAGGTCTGTGATTTGTATGAACAAATCTCATGCCTTGAAAGCCTCAAACCTTGTAAACATGTCGACACTCTCTTCACTCAGCTGGTACTCACGTGCATGCCACCCACAAGCCCTCATTTCCACATCAATTCACTCTCAAAACCACTTCAACTAATGAGGTCAAATCTCATTCGTCTTTGTGCTCAAGCTGAGTCTCTTTTAGAGTCTCATTTCTCTGATCTCTTAGCTAAATTTGATTCCCCTCTTCACCATCTCCATCTCTTCCCTTACTTCTCTAACTACCTCAAACTTTCCCTCCTTGAATTCTCCATCCTCCGCCGCCACTGCCCCGCCCTCCCCTCCGCCGTTGCCTTCGTCGGCTCTGGTCCCCTTCCTCTCACCTCCATCGTCCTCGCCACTCGCCACCTCACCTCCACCGCTTTCCACAATTACGATCTCGACCCCCTTGCTAATTCTCAGGCGTCGAATTTGGTATCGGTAGACCCGGACCTAAAGACGAGGATGGTGTTTCACACCTGCGACATCATGAAAGTGACAGACGAGCTGAAACAGTACGAGGTTGTGTTTTTGGCAGCTCTGGTAGGGATGGAGAAAGAGGAGAAATTGAGAGTGATTGAGCATTTGTCTGAGTTCATGTCAGAAGGGGCTTATTTGATGTGTGGAGACTTCGACTTTGTTGAGGAACATCCATGGAGAGGAGCAAGGTTATAA 741 47.91 MVCEEEALIQKVCDLYEQISCLESLKPCKHVDTLFTQLVLTCMPPTSPHFHINSLSKPLQLMRSNLIRLCAQAESLLESHFSDLLAKFDSPLHHLHLFPYFSNYLKLSLLEFSILRRHCPALPSAVAFVGSGPLPLTSIVLATRHLTSTAFHNYDLDPLANSQASNLVSVDPDLKTRMVFHTCDIMKVTDELKQYEVVFLAALVGMEKEEKLRVIEHLSEFMSEGAYLMCGDFDFVEEHPWRGARL 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3447708 3449577 - Tan0020180.2 Tan09g0076 762419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0076 246 Pfam Nicotianamine synthase protein 5 230 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Tan09g0076 246 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 246 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Tan09g0076 246 PANTHER NICOTIANAMINE SYNTHASE 3 5 230 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Tan09g0076 246 Gene3D Vaccinia Virus protein VP39 7 231 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0076 K05953 - - csv:101218907 405.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0076 Tan-Chr9:3447708 Tan09g1670 Tan-Chr9:68348733 5.70E-55 dispersed
Tan09g0075 Tan-Chr9:3447708 Tan09g0076 Tan-Chr9:3447708 6.00E-127 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g0664 . 5 271 Nicotianamine Synthase Gene Family AT1G09240 61.3 3.1e-93 339.3
Tan09g0075 . 1 273 Nicotianamine Synthase Gene Family AT1G09240 60.0 2.0e-92 336.7
Tan08g0663 . 1 280 Nicotianamine Synthase Gene Family AT1G09240 60.9 6.6e-88 321.6
Tan09g1670 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 53.3 2.4e-74 276.6
Tan09g0076 . 1 229 Nicotianamine Synthase Gene Family AT1G09240 58.0 5.6e-71 265.4
Tan09g0075 . 3 273 Nicotianamine Synthase Gene Family AT1G56430 62.6 1.2e-97 354.0
Tan08g0664 . 5 318 Nicotianamine Synthase Gene Family AT1G56430 56.0 1.6e-97 353.6
Tan08g0663 . 3 280 Nicotianamine Synthase Gene Family AT1G56430 60.6 1.8e-88 323.6
Tan09g1670 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 52.6 3.5e-76 282.7
Tan09g0076 . 3 229 Nicotianamine Synthase Gene Family AT1G56430 59.4 2.2e-75 280.0
Tan08g0664 . 5 272 Nicotianamine Synthase Gene Family AT5G04950 61.3 1.1e-93 340.9
Tan09g0075 . 1 273 Nicotianamine Synthase Gene Family AT5G04950 55.8 4.6e-89 325.5
Tan08g0663 . 1 280 Nicotianamine Synthase Gene Family AT5G04950 57.2 1.3e-88 323.9
Tan09g1670 . 15 281 Nicotianamine Synthase Gene Family AT5G04950 51.3 2.1e-73 273.5
Tan09g0076 . 1 229 Nicotianamine Synthase Gene Family AT5G04950 55.2 2.1e-70 263.5
Tan08g0664 . 5 272 Nicotianamine Synthase Gene Family AT5G56080 60.7 4.0e-93 339.0
Tan09g0075 . 1 273 Nicotianamine Synthase Gene Family AT5G56080 57.8 3.2e-90 329.3
Tan08g0663 . 1 280 Nicotianamine Synthase Gene Family AT5G56080 57.8 5.1e-88 322.0
Tan09g0076 . 1 229 Nicotianamine Synthase Gene Family AT5G56080 55.4 6.9e-69 258.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125