Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0078 ATGTTGTTATCCGTGAAAATGCTGCTGCTGTTTCTGGCTTTCTTCTACGTTGGAATTCATAGCATCTTCTCCTATACAGACCCAAACGATCTTCAAGTCCTGATATCGTTGAGAGATCAATGGCAAAACACACCACCAACATGGGAGACATCAGATGATCCATGTGGAAGTCAATGGGATGGAATCGTCTGCAACAATTCCAGAGTCACTGAATTAAAATTACCATCTATGGGCCTTAAAGGGAATATTAATGGTGACATTGGAAGCCTTACTGAACTAATAATATTGGACCTATCATTTAATAAAGACCTCACTGGTCCACTCTCTCCTGCGTTGGGGGATTTGCAAAATTTGAATGCCTTATTCTTAGCTTCATGTGGCTTCAATGGCTATATTCCCGAGGAGTTGGGCAACCTTACTCAGTTGGTGTCCTTGGTTTTGAATTCAAATGAGCTCATTGGTCCTATACCAGCAACTCTGGGAAAACTCTCGAAACTTGTTTTGCTAGACTTGATGGATAATCATTTGGATGGACCTCTCCCTGTCTCAACCTCTGATTCACCTGGTCTTGACCTTCTTCTTCAAGCACAACACTTTCACTTGAGCAACAACAGTCTATCGGGCCCTATTCCACCTAATCTTTTTAGCCAAAATATGAAATTAATACACATTGTACTTGATTGGAATCAATTCTCTGGGAGTATTCCTCCAACCTTGGGACTTGTTAAGACTCTTGAACTTCTCCGACTCGATCGGAATTCTCTAACAGGAATTGTTCCATCCAATCTTACCAACTTAAGAAGAATCAAACAATTGAATTTAGCACACAATAATCTGACAGGTCCATTCCCAAATTTAGCTCAAATGACTACACTATGTGTTGTGGACCTTAGTAACAACTCATTTGACTCAACAAATGCCCCAACTTGGTTCTCAAGCTTACCATCTCTTACCACTTTGATCGTTGAATCTGGGCCATTGCAAGGATCTGTCCCAGAAGCAATCTTTAGCTTACCGCAGATACAACAAATAAAACTGAAGTACAATTTATTTGGTGGGACATTGAGCATGGGTGGCAACGTCAGTCAGCATCTCGAGCTTGTTGATTTCGAAAACAATCATATTACCCAACTTGCATTGTTTGGATATACTAAAACTTTGATGCTTAAAGGAAATCCTCTGTGTGAGGTTCATCCTCTGTTAAAGCAAAATGATTGTCAACTTTCACAATCAACTCCAAAGCCTAATTTTACCAGTCCTGTCCACTGTGAAGCTAGCTCGTGCATCAAAGGCGAGAAGAATAACCCTCAAACCTGTGAATGTCAATATCCATTTACAGGGATTTTGTCTTTCAGAGGACCTTCAATCAGAGAGTTCAGTAATGTGACTCTGTTTCAGTTACTGAAACAGAACCTCTCAAAGAAACTACAGCTTCCTCTTGGTTCAATTGTTGTTCAGAATCCTGTGTTTGATAGTTATGATTATCTTCGAATTGAACTTGAATTTTTTCCATCCTTTGGAAAGTATTTCAATCGTTCAGAAATTCTGAGGATTGCCTCTGAATTGAGTCATCAAACTTTCTTACTTTCTGAAGAATTGGGATCATTTTTTTTCATTCTACCTTCGTACAGTTTTTCAGGTAAGTTATTAGGCCATGGGTGGCTTATTGGGATTGCAATTGGCTGTGCCTTACTCATCCTATGCTTCCTTGGAGTTGGAATATATGTAATTAAGCTGAAGAAACAAGTATCAAAAGCGATTTCATTGTGCAAGCCATTTGCTTCCTGGTCATCTATTGAACAAGAAAGTGGAGACGCACCACAATTAAAGGGAGCAATATATTTTTCCTATGATGAGCTTAGCAAGTTGACTAATAATTTCTCCACAACTAATGAGATAGGAGTTGGAGGATATGGAAAGGTAAACATCTTAAGGAGTTCCTGTATCCATCTTGGTTGGAAGAGAAGACTCGAAATAGCACTTGACTCTGCAAGAGGACTAACATACCTTCACGAGTTCGCAAATCCTCCTATAATTCATAGAGATATTAAGTCCTCCAATATTCTCTTGGATGGATATTTAAATGCGAAGGTTGCAGATTTTGGCTTGTCCAAGCTTTTATTTGACCATCAAAAGGGATATATTTCTTCCGGAGTTAAAGGCACGTGGTTGCAGCACCTCAATATACACGTATGA 2196 39.39 MLLSVKMLLLFLAFFYVGIHSIFSYTDPNDLQVLISLRDQWQNTPPTWETSDDPCGSQWDGIVCNNSRVTELKLPSMGLKGNINGDIGSLTELIILDLSFNKDLTGPLSPALGDLQNLNALFLASCGFNGYIPEELGNLTQLVSLVLNSNELIGPIPATLGKLSKLVLLDLMDNHLDGPLPVSTSDSPGLDLLLQAQHFHLSNNSLSGPIPPNLFSQNMKLIHIVLDWNQFSGSIPPTLGLVKTLELLRLDRNSLTGIVPSNLTNLRRIKQLNLAHNNLTGPFPNLAQMTTLCVVDLSNNSFDSTNAPTWFSSLPSLTTLIVESGPLQGSVPEAIFSLPQIQQIKLKYNLFGGTLSMGGNVSQHLELVDFENNHITQLALFGYTKTLMLKGNPLCEVHPLLKQNDCQLSQSTPKPNFTSPVHCEASSCIKGEKNNPQTCECQYPFTGILSFRGPSIREFSNVTLFQLLKQNLSKKLQLPLGSIVVQNPVFDSYDYLRIELEFFPSFGKYFNRSEILRIASELSHQTFLLSEELGSFFFILPSYSFSGKLLGHGWLIGIAIGCALLILCFLGVGIYVIKLKKQVSKAISLCKPFASWSSIEQESGDAPQLKGAIYFSYDELSKLTNNFSTTNEIGVGGYGKVNILRSSCIHLGWKRRLEIALDSARGLTYLHEFANPPIIHRDIKSSNILLDGYLNAKVADFGLSKLLFDHQKGYISSGVKGTWLQHLNIHV 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4082948 4116315 + Tan0005460.2 Tan09g0078 762421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0078 731 FunFam Leucine-rich repeat protein kinase family protein 186 285 - -
Tan09g0078 731 Gene3D Transferase(Phosphotransferase) domain 1 642 724 - -
Tan09g0078 731 PANTHER RECEPTOR-LIKE PROTEIN 55 46 641 - -
Tan09g0078 731 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515(InterPro)
Tan09g0078 731 Pfam Leucine Rich Repeat 197 215 IPR001611 GO:0005515(InterPro)
Tan09g0078 731 Gene3D Ribonuclease Inhibitor 287 442 IPR032675 -
Tan09g0078 731 FunFam Leucine-rich repeat family protein 29 185 - -
Tan09g0078 731 ProSiteProfiles Protein kinase domain profile. 544 731 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g0078 731 Gene3D Ribonuclease Inhibitor 29 185 IPR032675 -
Tan09g0078 731 Gene3D Ribonuclease Inhibitor 186 286 IPR032675 -
Tan09g0078 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 678 690 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g0078 731 SUPERFAMILY Protein kinase-like (PK-like) 608 722 IPR011009 -
Tan09g0078 731 Pfam Protein tyrosine and serine/threonine kinase 642 712 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g0078 731 SUPERFAMILY L domain-like 260 399 - -
Tan09g0078 731 SUPERFAMILY L domain-like 29 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0078 Tan-Chr9:4082948 Tan10g1504 Tan-Chr10:23066185 1.30E-179 dispersed
Tan09g0077 Tan-Chr9:4082948 Tan09g0078 Tan-Chr9:4082948 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68008 PF00069 Pkinase 1.10E-10 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0078 - - - 0.0