Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0197 ATGGGTTGTGTTGTGAAGTGCGTTTTCATGATTGTTGTCTTCATGTCGATGCCTTTTCCATCGCAGAACTCCCACATTTTGGTTGCTAACTCACTGTTGAATGCAGCAGAGAGCTTCAATATTAAAGAACTTGAGAGAGTTTCAGGGGAAGATGAAAGTGGAGGAAATGAACCTTTCATTCTGGAGAGAGTCAGAGCTCTACTTGGACTCAAGAGCTTACGATTGGGAAATCAAAGCCCATCAGATCTTTCGCCTTCGCCGTCACCATCGCCGTCTCCATCACCAGCCTCCATTGCTCCATCTCCTGTTCCTGTGGCAGCTCATCGAGTGCACATTCATGAACATTCCCACCCTCATCAGCTTCGCTTGCACAAGAGCCGGCCAGTTTACAAATCTAAAAGACAAGAAGATGCAAGAGAAAGAAGAGTCAGAAAAATTCTTGTTGCAGTTCTTGTGTCTGCAGGAGTCACCATTTTGGTATGCGCTATTGCTGCCTTTTGGGTTTGCAAGAAGTTCAAAAGTCGGAGAGAGGAACCCACAGAGAAGCTTTCTATTAAGAGTGAAACAGGAGAGAAGACAGCTAGACCAAAATCTGGGCTTGATCTGTTCGATCTCAGTATGCTTGGAATGGATGTTGAAGAACAGACGCAAACTTCTGTAAGTGAAAAGGAGTTATCAGTTCATAAAGAGGGGGAAAGGGGCCAAGAGATGTTGGATTCAGAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAATGATGTATGTTAACAATGAGGAAGTTGATAGAAAGTCAATCCAATGTGTATCTGATGGAGCTGATTCTTCATCTGGGGAGAGAGTGACTCCTGTTAAATCTTGTTCATCTGATGATGAGGAATCATTCCATTCTTGTGGGGATTCCAATTTGTCGAATGTTCGCCTTTCAAATGCATCGGAATCTTCTGCTAATGTGACAACAAATTCTACTTGTTCAGTTCCAATTGTGAACTTATCAACTAAACTGGAAATACAATGTGATGAATCTAACAAACCATTAACTTCTGATCAGTCGCATCTTACCCATTCCCCTTGTAATTCAGAACCTCAAATGCAGATGGTTTCACATTCTGTAGGTTGCCGAAAGAATGTCCCATCTCTATCTCCACCCCCACCGCCACCGCCGCCACCGCCGCCAGTCACTGATCGAAGTTCATTTTCCCTCTCTTCACCCTTTTCAACTGGATCTACTTCCTCTTCTGCATTGTTAAGATCATCGTCTCCTGCAATGTCAGATTCTTCTTCGTTATCTCAAATACCATGGAATGATCTACCCTCACCTCCAAATATTGCTAAACCTTCACTACCATCATCTGCTATTCCTCCACCCCCTTGTCCACCACCCAGTTTGAAACCAAACGCTTACTCTTTCAAAACTCCACCTCCTCCTCCTTCCAAGCTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATTCGCGGCCAAAACTTAAGCCTCTTCACTGGGACAAAGTAAGAGCTGCACCAGATCGATCAATGGTGTGGGACAAGCTAAGATGGAGTTCATTTGAGCTAGATGAAGAAATGATTGAATCACTATTTGGCTACAATCAACATGATTCAATGAAGAATGGCGATGCTAGCAACAAAAGCCCTTCTCCAAGCAAGCATATACTAGAGGCAAAGAGACTTCAGAACCTAACCATACTCTTAAAAGCCCTGAATGTCTCAACAGAACAAGTTTGTGAAGCCATAGAACAAGGGACCGGGTTACGTTTAAGACAACTTGAAGCATTGGTTAAGATGGTACCAACCCAGGAAGAAGAGGCCAAATTGTTTGGCTATGAAGGAGACATCGGTGAATTGGGGTGTACAGAGAATTTTGTCATAGCAATTCTGAGAATACCATTCGCCTTTCAGCGAGTAGAAGCGATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAACCATCTCCGAAATTCGTTTTCAATGCTAGAGGAGGCCTGCAAGGAACTAAGATCCAGCAGGCTCTTCCTGAAACTACTGGAAGCCGTGCTCAAAACAGGGAACCGAATGAACGTCGGAACAAGCAGAGGAGGCGCAAGAGCATTCAAACTAGACGCACTCCTAAAACTCTCCGACGTCAAAGGAACCGACGGCAAAACGTCCCTACTCCACTTTGTCGTGCAAGAAATGATCCGATCAGAAGGAATCCGAGTCTCCGGTAGCATAATGGGGAAAATCAGCCAGAAAAACAAATCGAGAACAATCGAAGAAAGAGAAAACGATTACCGAAGAATGGGATTGGATCTCGTCTCCGGATTAAGCACCGAATTACACAACGTGAAGCGAGCGGCGACGATCGATCTGAAAGTTCTCGCGAGCTCGACAGCGAATCTGAACGACGGAATGGCGAAATTGCAACAACTGGTGTTGAAGGAGCTGTGTTTGGATGAACGGAGCGGGAACTTCGTGGGCGCCATGAAAGGGTTCTTGAGTTACGTGAAGAAGACGATGGAGGAGGTGAGGAAGGACGAAGAAGGGGTAATGGGAAGCGTGAGAGAGATCACAGAGTACTTCCATGGAAATGTGAGCAAAGAGGAGACGAATCCGCTGAGGATTTTTGTGATTGTGAGAGATTTTTTGGGAATGTTGGACAATGTGTGTAAGAGCTTCAAGATTGGAAGTTGA 2688 44.53 MGCVVKCVFMIVVFMSMPFPSQNSHILVANSLLNAAESFNIKELERVSGEDESGGNEPFILERVRALLGLKSLRLGNQSPSDLSPSPSPSPSPSPASIAPSPVPVAAHRVHIHEHSHPHQLRLHKSRPVYKSKRQEDARERRVRKILVAVLVSAGVTILVCAIAAFWVCKKFKSRREEPTEKLSIKSETGEKTARPKSGLDLFDLSMLGMDVEEQTQTSVSEKELSVHKEGERGQEMLDSEFDNVSVSSTKEMMYVNNEEVDRKSIQCVSDGADSSSGERVTPVKSCSSDDEESFHSCGDSNLSNVRLSNASESSANVTTNSTCSVPIVNLSTKLEIQCDESNKPLTSDQSHLTHSPCNSEPQMQMVSHSVGCRKNVPSLSPPPPPPPPPPPVTDRSSFSLSSPFSTGSTSSSALLRSSSPAMSDSSSLSQIPWNDLPSPPNIAKPSLPSSAIPPPPCPPPSLKPNAYSFKTPPPPPSKLPQFMAFGKEGNSRPKLKPLHWDKVRAAPDRSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPSKHILEAKRLQNLTILLKALNVSTEQVCEAIEQGTGLRLRQLEALVKMVPTQEEEAKLFGYEGDIGELGCTENFVIAILRIPFAFQRVEAMLYRETFEDEVNHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKISQKNKSRTIEERENDYRRMGLDLVSGLSTELHNVKRAATIDLKVLASSTANLNDGMAKLQQLVLKELCLDERSGNFVGAMKGFLSYVKKTMEEVRKDEEGVMGSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGS 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10673567 10677099 + Tan0013821.1 Tan09g0197 762540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0197 895 MobiDBLite consensus disorder prediction 78 101 - -
Tan09g0197 895 MobiDBLite consensus disorder prediction 439 481 - -
Tan09g0197 895 MobiDBLite consensus disorder prediction 114 129 - -
Tan09g0197 895 MobiDBLite consensus disorder prediction 343 375 - -
Tan09g0197 895 MobiDBLite consensus disorder prediction 378 395 - -
Tan09g0197 895 SUPERFAMILY Formin homology 2 domain (FH2 domain) 499 889 - -
Tan09g0197 895 Gene3D Formin, FH2 domain 483 892 IPR042201 -
Tan09g0197 895 ProSiteProfiles Formin homology-2 (FH2) domain profile. 486 895 IPR015425 -
Tan09g0197 895 SMART it6_source 486 893 IPR015425 -
Tan09g0197 895 MobiDBLite consensus disorder prediction 114 136 - -
Tan09g0197 895 PANTHER FORMIN-RELATED 61 891 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Tan09g0197 895 MobiDBLite consensus disorder prediction 343 494 - -
Tan09g0197 895 MobiDBLite consensus disorder prediction 396 437 - -
Tan09g0197 895 Coils Coil 647 667 - -
Tan09g0197 895 MobiDBLite consensus disorder prediction 178 197 - -
Tan09g0197 895 MobiDBLite consensus disorder prediction 269 302 - -
Tan09g0197 895 Pfam Formin Homology 2 Domain 488 884 IPR015425 -
Tan09g0197 895 MobiDBLite consensus disorder prediction 84 100 - -
Tan09g0197 895 MobiDBLite consensus disorder prediction 269 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0197 K28090 - - csv:101208374 1343.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1167 Tan-Chr4:10916302 Tan09g0197 Tan-Chr9:10673567 7.40E-83 dispersed
Tan07g2065 Tan-Chr7:72130335 Tan09g0197 Tan-Chr9:10673567 6.60E-100 dispersed
Tan09g0197 Tan-Chr9:10673567 Tan01g4501 Tan-Chr1:110637190 6.80E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g193 . . . . . . . . Cmo10g01196 Cmo11g01174 . . . . Sed04g0465 . . Bhi02g02104 Tan09g0197 Cmetu02g0328 . Hepe09g1587 . . . . . . . . . . . Cone5ag0041 . Lsi06g00120 . Chy08g01021 . . . . . Bpe05g00226 . . Bma05g00280 . . . Cma10g01113 Cma11g01134 Car10g00964 Car11g00952 Cpe04g00158 . . . . . . . . Cla03g01635 Cam03g1721 Cec03g1767 Cco03g1771 Clacu03g1743 Cmu03g2293 Cre03g1973 . Csa01g02771 . Cme02g00090
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan07g2065 . 180 1053 FH2 protein (formin) Gene Family AT3G25500 51.3 2.8e-191 666.8
Tan04g1726 . 222 699 FH2 protein (formin) Gene Family AT3G25500 65.3 1.1e-163 575.1
Tan05g1655 . 417 896 FH2 protein (formin) Gene Family AT3G25500 58.3 2.9e-140 497.3
Tan09g0197 . 489 890 FH2 protein (formin) Gene Family AT3G25500 51.9 5.7e-104 376.7
Tan05g0848 . 1 296 FH2 protein (formin) Gene Family AT3G25500 50.5 2.4e-70 265.0
Tan04g1726 . 152 710 FH2 protein (formin) Gene Family AT2G43800 53.6 4.8e-144 509.6
Tan07g2065 . 616 1070 FH2 protein (formin) Gene Family AT2G43800 60.1 3.4e-142 503.4
Tan05g1655 . 474 912 FH2 protein (formin) Gene Family AT2G43800 54.8 2.5e-124 444.1
Tan01g4501 . 486 624 FH2 protein (formin) Gene Family AT4G15200 68.6 1.8e-46 184.5
Tan01g4501 . 490 1004 FH2 protein (formin) Gene Family AT5G54650 60.9 4.1e-167 586.3
Tan05g0848 . 1 345 FH2 protein (formin) Gene Family AT5G54650 61.1 1.2e-113 408.7
Tan07g2065 . 627 1028 FH2 protein (formin) Gene Family AT5G54650 50.8 4.1e-103 373.6
Tan05g1655 . 26 915 FH2 protein (formin) Gene Family AT5G67470 57.4 2.9e-234 809.3
Tan07g2065 . 608 1070 FH2 protein (formin) Gene Family AT5G67470 58.8 1.1e-135 481.9
Tan04g1726 . 259 681 FH2 protein (formin) Gene Family AT5G67470 63.9 1.9e-132 471.1
Tan09g0197 . 492 892 FH2 protein (formin) Gene Family AT5G67470 52.2 7.5e-105 379.4
Tan05g0848 . 1 297 FH2 protein (formin) Gene Family AT5G67470 50.2 1.6e-70 265.4
Tan04g1167 . 340 819 FH2 protein (formin) Gene Family AT1G59910 52.1 1.4e-125 448.4
Tan07g2065 . 648 1029 FH2 protein (formin) Gene Family AT5G48360 52.9 1.5e-101 368.2
Tan05g1655 . 478 872 FH2 protein (formin) Gene Family AT3G05470 51.9 1.5e-105 381.7
Tan11g1841 . 950 1261 FH2 protein (formin) Gene Family AT1G42980 51.4 4.9e-69 258.8
Tan11g1842 . 950 1261 FH2 protein (formin) Gene Family AT1G42980 51.4 4.9e-69 258.8
Tan11g1843 . 950 1261 FH2 protein (formin) Gene Family AT1G42980 51.4 4.9e-69 258.8
Tan11g1841 . 1 1268 FH2 protein (formin) Gene Family AT1G31810 65.4 0.0e+00 1222.2
Tan11g1842 . 1 1268 FH2 protein (formin) Gene Family AT1G31810 65.4 0.0e+00 1222.2
Tan11g1843 . 1 1268 FH2 protein (formin) Gene Family AT1G31810 65.4 0.0e+00 1222.2
Tan05g2418 . 976 1283 FH2 protein (formin) Gene Family AT5G07650 71.1 6.2e-119 426.0
Tan01g3567 . 1076 1391 FH2 protein (formin) Gene Family AT5G07650 65.5 1.6e-111 401.4
Tan09g1556 . 949 1268 FH2 protein (formin) Gene Family AT5G07650 62.9 1.2e-109 395.2
Tan09g1557 . 880 1199 FH2 protein (formin) Gene Family AT5G07650 62.9 1.2e-109 395.2
Tan11g1841 . 934 1265 FH2 protein (formin) Gene Family AT5G07650 60.2 9.9e-109 392.1
Tan11g1842 . 934 1265 FH2 protein (formin) Gene Family AT5G07650 60.2 9.9e-109 392.1
Tan11g1843 . 934 1265 FH2 protein (formin) Gene Family AT5G07650 60.2 9.9e-109 392.1
Tan01g3568 . 1076 1314 FH2 protein (formin) Gene Family AT5G07650 67.4 2.2e-84 311.2
Tan09g2088 . 1247 1388 FH2 protein (formin) Gene Family AT5G07650 77.5 1.8e-57 221.9
Tan05g2418 . 892 1283 FH2 protein (formin) Gene Family AT5G07770 63.1 5.4e-128 455.7
Tan01g3567 . 1000 1390 FH2 protein (formin) Gene Family AT5G07770 59.7 3.2e-120 429.9
Tan09g1556 . 872 1260 FH2 protein (formin) Gene Family AT5G07770 57.5 3.3e-117 419.9
Tan09g1557 . 803 1191 FH2 protein (formin) Gene Family AT5G07770 57.5 3.3e-117 419.9
Tan11g1841 . 870 1259 FH2 protein (formin) Gene Family AT5G07770 56.0 6.2e-116 415.6
Tan11g1842 . 870 1259 FH2 protein (formin) Gene Family AT5G07770 56.0 6.2e-116 415.6
Tan11g1843 . 870 1259 FH2 protein (formin) Gene Family AT5G07770 56.0 6.2e-116 415.6
Tan01g3568 . 1000 1310 FH2 protein (formin) Gene Family AT5G07770 60.6 6.0e-95 345.9
Tan09g2088 . 1172 1388 FH2 protein (formin) Gene Family AT5G07770 67.9 2.2e-73 274.2
Tan01g3567 . 974 1391 FH2 protein (formin) Gene Family AT3G32400 74.2 3.7e-170 595.5
Tan09g1556 . 856 1269 FH2 protein (formin) Gene Family AT3G32400 66.6 9.4e-150 527.7
Tan09g1557 . 787 1200 FH2 protein (formin) Gene Family AT3G32400 66.6 9.4e-150 527.7
Tan11g1841 . 870 1264 FH2 protein (formin) Gene Family AT3G32400 66.5 1.2e-141 500.7
Tan11g1842 . 870 1264 FH2 protein (formin) Gene Family AT3G32400 66.5 1.2e-141 500.7
Tan11g1843 . 870 1264 FH2 protein (formin) Gene Family AT3G32400 66.5 1.2e-141 500.7
Tan01g3568 . 974 1310 FH2 protein (formin) Gene Family AT3G32400 72.8 7.2e-134 474.9
Tan05g2418 . 869 1289 FH2 protein (formin) Gene Family AT3G32400 58.5 8.9e-132 468.0
Tan09g2088 . 1172 1388 FH2 protein (formin) Gene Family AT3G32400 63.2 6.4e-74 275.8
Tan01g3567 . 1 1391 FH2 protein (formin) Gene Family AT2G25050 52.7 0.0e+00 1153.3
Tan01g3568 . 1 1310 FH2 protein (formin) Gene Family AT2G25050 51.0 2.1e-301 1032.7
Tan09g1556 . 1 1269 FH2 protein (formin) Gene Family AT2G25050 51.3 8.1e-293 1004.2
Tan09g1557 . 2 1200 FH2 protein (formin) Gene Family AT2G25050 50.7 5.8e-267 918.3
Tan05g2418 . 900 1289 FH2 protein (formin) Gene Family AT5G07780 57.6 5.6e-112 402.1
Tan01g3567 . 1001 1391 FH2 protein (formin) Gene Family AT5G07780 55.0 1.7e-105 380.6
Tan11g1841 . 871 1260 FH2 protein (formin) Gene Family AT5G07780 53.0 3.6e-103 372.9
Tan11g1842 . 871 1260 FH2 protein (formin) Gene Family AT5G07780 53.0 3.6e-103 372.9
Tan11g1843 . 871 1260 FH2 protein (formin) Gene Family AT5G07780 53.0 3.6e-103 372.9
Tan09g1556 . 879 1268 FH2 protein (formin) Gene Family AT5G07780 53.8 5.2e-102 369.0
Tan09g1557 . 810 1199 FH2 protein (formin) Gene Family AT5G07780 53.8 5.2e-102 369.0
Tan01g3568 . 1001 1310 FH2 protein (formin) Gene Family AT5G07780 55.2 9.9e-85 311.6
Tan09g2088 . 1173 1388 FH2 protein (formin) Gene Family AT5G07780 55.7 4.4e-56 216.5
Tan09g2088 . 1 1388 FH2 protein (formin) Gene Family AT5G07740 56.5 5.7e-252 869.0
Tan05g2418 . 975 1289 FH2 protein (formin) Gene Family AT5G07760 69.9 8.3e-117 419.1
Tan01g3567 . 1075 1391 FH2 protein (formin) Gene Family AT5G07760 67.0 6.1e-112 402.9
Tan09g1556 . 948 1268 FH2 protein (formin) Gene Family AT5G07760 64.7 1.2e-110 398.7
Tan09g1557 . 879 1199 FH2 protein (formin) Gene Family AT5G07760 64.7 1.2e-110 398.7
Tan11g1841 . 944 1265 FH2 protein (formin) Gene Family AT5G07760 61.3 1.7e-106 384.8
Tan11g1842 . 944 1265 FH2 protein (formin) Gene Family AT5G07760 61.3 1.7e-106 384.8
Tan11g1843 . 944 1265 FH2 protein (formin) Gene Family AT5G07760 61.3 1.7e-106 384.8
Tan01g3568 . 1075 1310 FH2 protein (formin) Gene Family AT5G07760 68.6 1.3e-85 315.5
Tan09g2088 . 1246 1388 FH2 protein (formin) Gene Family AT5G07760 79.7 5.1e-58 223.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006698 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37