Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0200 ATGTCTAAAATCTCAGGGTGTTCTGATGATGGTGGGAGCTTTGTGTCTGAAGGTGAAAAATTAGGGAATCAATTCAGCCATGGAAGCTCTGAATCCCATCAACAGCCTCAGCTTGAAATTCCCAAAAAGAAAAGGAACTTACCAGGAACACCAGATCCAGATGCTGAAGTGGTAGCTCTATCTCCAGAAACCCTAATGGCAACAAATCGATTTGTGTGTGAAATATGCAGTAAGGGATTTCAAAGAGACCAAAACTTGCAGCTTCATAGGCGAGGGCACAACCTACCATGGAAGTTGAAGCAGCGGACGAGCGGGAGCGAGACAAGGAGGAGGGTGTTCGTGTGCCCGGAAACGTCCTGCGTCCACCACAATCCGGCGAGAGCGCTCGGAGACCTCACCGGAATCAAAAAGCATTTCAGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGAGAAATGCTCAAAAAAATATGCAGTTCAATCCGACTTGAAAGCTCATTCCAAAACTTGTGGCTCCAAAGAATACAAATGTGATTGTGGCACAATCTTTTCCAGGAGAGACAGCTTCATCACTCACAGAGCATTCTGCGATGCATTAACAGAAGAAAACAACAAACTAGCTCGTCAAGGAGCAACAATGGCTTCCACCGCCATTAATGCACCTTCCTTTCAACCTCAACAACTTCCTCACCTTCTATCTCAACATGCCCTCCCCTCGCCGCCATTAACACTGCCCCACGACCTCATGCCAATCCCTCCAAAACCTTTGAACCTTTCTGCCGGATCCATGTTTTCATCCTCCATTTCCAACAACTCCACCCCCTCCGATCAAACCGACCACCAGTTTCCCTCCTCCTCCGCTCTCATGTCCGCCACCGCACTGCTGCAGAAGGCGGCGCAGATGGGGGCTGCCATGAGCGGAGGCGGAAACCACCCCGCCACTTGTTTGAGTTCGTCCATGATCCAATCGAAGAAGGGCTTCGTTACAACAATGGCTCCTTCTTCCTTTGGAGGGTTGTTGCCCACCCCCTATTTGCAGAAATGCCCACAAGAAAACATTTTGTCTCAGTTATCTTCTAATAGCGGAGCTGTGGACCTGGAGATGATCAACAACATTTCGATGTTGAACGGTGTGTTCGATCAGCCGCTCGGGGAGGCTGCGAGGAAGACGATGACACTTGATTTGTTGAGGGTTGAGGGAGGAAAAGGGAGGAACTTTGAGGGACCAGAAAATGTGGAATTTGGAGGGCTTATGGAGAATATGAGTTACTTTCGCCACCAAGGGACCATGGGAAGGCATACATGGGAGATTTGA 1314 49.01 MSKISGCSDDGGSFVSEGEKLGNQFSHGSSESHQQPQLEIPKKKRNLPGTPDPDAEVVALSPETLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETRRRVFVCPETSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKLARQGATMASTAINAPSFQPQQLPHLLSQHALPSPPLTLPHDLMPIPPKPLNLSAGSMFSSSISNNSTPSDQTDHQFPSSSALMSATALLQKAAQMGAAMSGGGNHPATCLSSSMIQSKKGFVTTMAPSSFGGLLPTPYLQKCPQENILSQLSSNSGAVDLEMINNISMLNGVFDQPLGEAARKTMTLDLLRVEGGKGRNFEGPENVEFGGLMENMSYFRHQGTMGRHTWEI 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11128365 11135057 - Tan0003955.1 Tan09g0200 762543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0200 437 Gene3D Classic Zinc Finger 126 206 - -
Tan09g0200 437 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 147 171 - -
Tan09g0200 437 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 174 211 - -
Tan09g0200 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Tan09g0200 437 FunFam protein indeterminate-domain 12-like 50 119 - -
Tan09g0200 437 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Tan09g0200 437 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 400 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan09g0200 437 SMART c2h2final6 148 168 IPR013087 -
Tan09g0200 437 SMART c2h2final6 113 143 IPR013087 -
Tan09g0200 437 SMART c2h2final6 71 93 IPR013087 -
Tan09g0200 437 Gene3D Classic Zinc Finger 70 94 - -
Tan09g0200 437 MobiDBLite consensus disorder prediction 19 36 - -
Tan09g0200 437 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Tan09g0200 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 176 IPR013087 -
Tan09g0200 437 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 109 143 - -
Tan09g0200 437 MobiDBLite consensus disorder prediction 1 55 - -
Tan09g0200 437 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Tan09g0200 437 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g0852 Tan-Chr6:7114081 Tan09g0200 Tan-Chr9:11128365 5.90E-77 dispersed
Tan08g1892 Tan-Chr8:71233370 Tan09g0200 Tan-Chr9:11128365 9.20E-81 dispersed
Tan09g0200 Tan-Chr9:11128365 Tan11g1709 Tan-Chr11:16778063 4.10E-56 dispersed
Tan09g0200 Tan-Chr9:11128365 Tan03g1047 Tan-Chr3:66769510 8.70E-83 transposed
Tan09g0200 Tan-Chr9:11128365 Tan05g0934 Tan-Chr5:7583683 8.70E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28272 PF00096 zf-C2H2 0.0073 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0200 - - - 0.0