Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0222 ATGGATCAACAAGGGCATGGCCAATCTCCATCCATGGGAGCGGTTGGTAGTGGAGGTCAGCTGGCATATGGTAGCAACCTGTACCATCCCAGCCAAATGACTGTAGGACCAACTTCTGGATCTGTTGTTACATCGGTTGGAGGTATTCAATCTACGAGTCAGCCTGGTGGAACTCAACTTGCTCAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAACAACAGCTTCAGCAACAGCTCCAGACTTTTTGGGCAAATCAGTACCAAGAGATTGAGAAGGTAAATGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGATGTAAGAATGATATCAGCTGAGGCACCGGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTGCGGTCTTGGAATCATACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGACATAGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATTGTGCCAAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATAACAGTTGGAGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTTGGAGCACCCGGAATGATGATGGGTAAGCCCGTGATGGACCCAGCTATGTATGCTCAACAATCAAACCCTTACATGCCTCAACAAATGTGGCAGCACACACAAGATCAAGGCCCTCCTGATCAATAA 783 46.62 MDQQGHGQSPSMGAVGSGGQLAYGSNLYHPSQMTVGPTSGSVVTSVGGIQSTSQPGGTQLAQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMMMGKPVMDPAMYAQQSNPYMPQQMWQHTQDQGPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13756473 13759888 - Tan0001125.1 Tan09g0222 762565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0222 260 Pfam Core histone H2A/H2B/H3/H4 64 166 IPR007125 GO:0003677(InterPro)
Tan09g0222 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 76 198 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Tan09g0222 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982(InterPro)
Tan09g0222 260 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Tan09g0222 260 SUPERFAMILY Histone-fold 70 175 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0222 K08066 - - csv:101209664 431.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1294 Tan-Chr2:36322198 Tan09g0222 Tan-Chr9:13756473 1.60E-66 dispersed
Tan02g1295 Tan-Chr2:36322198 Tan09g0222 Tan-Chr9:13756473 1.60E-66 dispersed
Tan09g0222 Tan-Chr9:13756473 Tan09g2376 Tan-Chr9:73487839 5.10E-54 dispersed
Tan09g0222 Tan-Chr9:13756473 Tan09g0223 Tan-Chr9:13756473 1.00E-142 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g2376 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.3e-88 323.6
Tan09g0222 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 7.8e-54 208.0
Tan09g0223 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 7.8e-54 208.0
Tan02g1294 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.4 3.0e-53 206.1
Tan02g1295 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.4 3.0e-53 206.1
Tan09g0222 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 3.1e-55 212.6
Tan09g0223 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 3.1e-55 212.6
Tan02g1294 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.3 2.8e-48 189.5
Tan02g1295 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.3 2.8e-48 189.5
Tan09g2376 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.0e-42 171.0
Tan09g0222 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.4 4.2e-62 235.3
Tan09g0223 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.4 4.2e-62 235.3
Tan02g1294 . 82 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.7
Tan02g1295 . 82 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.7
Tan09g2376 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.6e-51 199.5
Tan09g2376 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.2e-38 155.2
Tan09g2376 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.0e-80 297.4
Tan09g0222 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 8.6e-51 198.0
Tan09g0223 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 8.6e-51 198.0
Tan02g1294 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 4.3e-50 195.7
Tan02g1295 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 4.3e-50 195.7
Tan02g1294 . 57 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.4 9.3e-64 240.7
Tan02g1295 . 57 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.4 9.3e-64 240.7
Tan09g0222 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.8 2.6e-50 196.1
Tan09g0223 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.8 2.6e-50 196.1
Tan09g2376 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.8e-50 194.9
Tan02g2212 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.5 4.4e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28275 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Tan TF