Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0222 ATGGATCAACAAGGGCATGGCCAATCTCCATCCATGGGAGCGGTTGGTAGTGGAGGTCAGCTGGCATATGGTAGCAACCTGTACCATCCCAGCCAAATGACTGTAGGACCAACTTCTGGATCTGTTGTTACATCGGTTGGAGGTATTCAATCTACGAGTCAGCCTGGTGGAACTCAACTTGCTCAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAACAACAGCTTCAGCAACAGCTCCAGACTTTTTGGGCAAATCAGTACCAAGAGATTGAGAAGGTAAATGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGATGTAAGAATGATATCAGCTGAGGCACCGGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTGCGGTCTTGGAATCATACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGACATAGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATTGTGCCAAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATAACAGTTGGAGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTTGGAGCACCCGGAATGATGATGGGTAAGCCCGTGATGGACCCAGCTATGTATGCTCAACAATCAAACCCTTACATGCCTCAACAAATGTGGCAGCACACACAAGATCAAGGCCCTCCTGATCAATAA 783 46.62 MDQQGHGQSPSMGAVGSGGQLAYGSNLYHPSQMTVGPTSGSVVTSVGGIQSTSQPGGTQLAQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMMMGKPVMDPAMYAQQSNPYMPQQMWQHTQDQGPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13756473 13759888 - Tan0001125.1 Tan09g0222 762565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0222 260 Pfam Core histone H2A/H2B/H3/H4 64 166 IPR007125 GO:0003677(InterPro)
Tan09g0222 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 76 198 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Tan09g0222 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982(InterPro)
Tan09g0222 260 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Tan09g0222 260 SUPERFAMILY Histone-fold 70 175 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1294 Tan-Chr2:36322198 Tan09g0222 Tan-Chr9:13756473 1.60E-66 dispersed
Tan02g1295 Tan-Chr2:36322198 Tan09g0222 Tan-Chr9:13756473 1.60E-66 dispersed
Tan09g0222 Tan-Chr9:13756473 Tan09g2376 Tan-Chr9:73487839 5.10E-54 dispersed
Tan09g0222 Tan-Chr9:13756473 Tan09g0223 Tan-Chr9:13756473 1.00E-142 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28275 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0222 K08066 - csv:101209664 431.795