Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0399 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGACGATGACGACGAAGAAGAGGAGGAATTAAACGACGATCCTTCCCCTTCCACTTCCTCCGCCGGCGCCGCTGCTGTCCCTTCTGTTTCCCCTCTTGTCACCATCGCCACTCCCGGCACCACCGACCGTCCCGTCTCTGTTGTTCCTCCTCCTTCGATTGCCTCCATTTCCTCCGCCGATCTGATCCGTCAGCGCCTCGAGACCGTCTCCGCCGAGCCTTTGACCTTGCCGGGCGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGTCTTTGGACCGATGAGGATGAGATCGAGCTATTGCAGGGGTTTTTGGATTACACGATACAGCGTGGTACGACTCACCATCATCAGAACGATACGGCCTTGTTCTATGACCAGATCAAGTCCAAATTACAGTTGGATTTTAACAAGAATCAGCTCGTCGAGAAGCTTCGGAGGTTGAAGAAGAAGTACCGCAACGTTATTGGGAAGATTAGCTCTGGTAAGGACTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTCGAGATCTCTCGCAAGATCTGGAGTAATACCGGCCGAATTGGAGTCGAAGACAACGCTTTGGACGATGACGAGCCTGCTCCGACTCTGTATGCCAACTACATGGACGTTAGAAACGAAGAGATAATGGCGAATTGCGCAGAGAAGAAACCGACGCCGACACCAAAATCGCGGAAGCGTTCACGGCCTGGATCGGGATTGAGAATGGATGGGCCGCGATCGTCAAATGAAAATTTGAATAAAGAGAAAAACAGTACCTACAACAACAACAACAACGATAATGTCAATAACGTAGCGGTAGCGGGATTGATCGAGGAGACGGTGAGGAGCTGTCTGTCGCCACTGTTTAAGGAATTGTTGAGTAGTTCCATGGGAGGAGGGCTGTGTGGAGGCAGAGGGTTCAGTGGATTGGCTCTGCATCCGATTCCATTGAGCTTCGGTGGAGCTTCAATGAATTTTGGAGGTGGAGGAGAAATGGCGGATGAGAGATGGAGAAAGCAGCAGATTTTGGAACTGGAGGTTTATTCAAAGAGGTTGGAGTTGGTTCAGGAACAAATTAAGACGGCATTAGAAGACTTGAGATCCATGGGAGGCTGA 1197 51.04 MDPRNDAVFPDEDLEDDEESLDDDDDDEEEEELNDDPSPSTSSAGAAAVPSVSPLVTIATPGTTDRPVSVVPPPSIASISSADLIRQRLETVSAEPLTLPGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTIQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVEDNALDDDEPAPTLYANYMDVRNEEIMANCAEKKPTPTPKSRKRSRPGSGLRMDGPRSSNENLNKEKNSTYNNNNNDNVNNVAVAGLIEETVRSCLSPLFKELLSSSMGGGLCGGRGFSGLALHPIPLSFGGASMNFGGGGEMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38430760 38432993 + Tan0004620.1 Tan09g0399 762742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0399 398 MobiDBLite consensus disorder prediction 1 52 - -
Tan09g0399 398 Coils Coil 163 183 - -
Tan09g0399 398 Coils Coil 372 392 - -
Tan09g0399 398 MobiDBLite consensus disorder prediction 271 292 - -
Tan09g0399 398 MobiDBLite consensus disorder prediction 245 292 - -
Tan09g0399 398 PANTHER BNAANNG10740D PROTEIN-RELATED 15 395 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan09g0399 398 MobiDBLite consensus disorder prediction 9 36 - -
Tan09g0399 398 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 113 209 IPR053932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0399 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2376 Tan-Chr3:77569790 Tan09g0399 Tan-Chr9:38430760 9.70E-23 dispersed
Tan08g0457 Tan-Chr8:4388549 Tan09g0399 Tan-Chr9:38430760 4.40E-35 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g0399 . 56 225 GeBP Transcription Factor Family AT3G04930 61.6 3.0e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28278 PF04504 DUF573 6.00E-34 CL0123 Tan TF