Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0484 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTCGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGGGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCCCTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGGAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCGGGTTTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGACGTAGAAGCTCAATTAAGAAAGCAGGATATTGCAAAGAATAAAATTGCTCAGAGGCAGGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCCGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTTCTGGTAATGAAGAGCTTGCAGAAGGAAGTGGTGCTACACGTGCTCTGCTTGCAAATTATGCACAGACACCACGGCAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGGAAAGGTGATGCTATCATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGCTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGTAGCGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCCAAAGGAACACCTATTAGAGATGAGTTACATATCAACGAAGATATGGACGCACATGATAGTGCAAAACTAGAGTCTCAAAGACAAGCTGATTTGAGGAAGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTTGTTATGCAACCAATTCCTGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGATATGTCTGACAGGATAGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTACTTTATTAGAGCATGATAATGCGAAGTACCCGATCGACGAAAAGGTCAACAAGGAGAAAAAGAAAGGTTCCAAGCGCACTGGAAATAGACCTACTGCAGCCATCCCTACAATAGATGATTTTGAAGAAGCTGAGATGGAAGAGGCTGATTATTTGATAAAGGAAGAGGCCCGGTATCTGTGTGTTGCGATGGGGCATGAAAATGAATCCTTAGAGGAATTTGTGGAAGCTCACAAAACGTGCTTAAACGATCTTATGTACTTCCCCACAAGGAATGCTTATGGACTTTCCAGCGTGGCTGGAAACCATGAGAAACTAGCCGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCGACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAACCTTTTGGCGGACTTGGAGAAGATGCAGAAAATCATGGACGAGCGCAAGGCACAGGCTCAAAAGGAAGAAGAAATTGCAGCGGAGAATATCGCTCTTCAGTTGGCCAAGGCTGAGGCAGCACAAAAGGAAGAAGAAAATGCAGTGGAGAATCGCGTTTTTCAGTTGGCCGAGGCTGAGGCAGCACAAAAGGAAGAAGAAATTGCAGTGGATAATCACTCTCTTCAGTTGGCCGAGGCTGAGGCTAATCAAACCGTTGGAGAAAATGCTGATAGTTCTGAAGCTGTGTCTGCATTAGCAGTTGATCGTGAAAATTCTATGCCTGTTACCTCAACTCCCAATGAATTGACGGGTGAACAACCAAACTTGTCTGTGGGGCCCGATCATGAAACTTCTAATGCGATGGATATTGATATAGAGAAAGAAAATGTAGCGATGAGCTCAGATATTGGCTCACCTGATAACAAACTACCTTCAGTTGGAGAGAATGCATCATTGCCTGACAATGGTTTCAAAGATTCTGATATAAGTCAACCCAGTGATGTTCCTCCACAAGAACTCTTGGTCCCTCCTGCAAATAGCAGTCCAGATGTGACCGTTACGGCGGAAGATAAGATCAGCAATGATTCGGTTGATGGAGAAGCAATTGAAAATGCCGAATGTAGTACCGATATTGTGGAGGAAGTCAAAGATGTCAAAGCTCAGCAGCCTGTGATTGAAGCTGGAAACTCGGATGTGAATTCGACTAACCTGGATTCTGCTGCACCTGCACCTTCTAATAAGGATGACCCTGCTTATAACGATAACGTGGAACTCCCTCGTGACGAAGGTGAAGCTACGGGATCAAATGTCTAG 3234 45.05 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLSGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDAHDSAKLESQRQADLRKNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLTLLEHDNAKYPIDEKVNKEKKKGSKRTGNRPTAAIPTIDDFEEAEMEEADYLIKEEARYLCVAMGHENESLEEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISGIWEEVQKQKELERTLQLRYGNLLADLEKMQKIMDERKAQAQKEEEIAAENIALQLAKAEAAQKEEENAVENRVFQLAEAEAAQKEEEIAVDNHSLQLAEAEANQTVGENADSSEAVSALAVDRENSMPVTSTPNELTGEQPNLSVGPDHETSNAMDIDIEKENVAMSSDIGSPDNKLPSVGENASLPDNGFKDSDISQPSDVPPQELLVPPANSSPDVTVTAEDKISNDSVDGEAIENAECSTDIVEEVKDVKAQQPVIEAGNSDVNSTNLDSAAPAPSNKDDPAYNDNVELPRDEGEATGSNV 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45481686 45498853 - Tan0001688.1 Tan09g0484 762827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0484 1077 Coils Coil 167 187 - -
Tan09g0484 1077 Gene3D - 60 114 - -
Tan09g0484 1077 FunFam CDC5 cell division cycle 5-like 5 59 - -
Tan09g0484 1077 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Tan09g0484 1077 MobiDBLite consensus disorder prediction 157 176 - -
Tan09g0484 1077 MobiDBLite consensus disorder prediction 400 414 - -
Tan09g0484 1077 MobiDBLite consensus disorder prediction 1027 1077 - -
Tan09g0484 1077 CDD SANT 10 53 IPR001005 -
Tan09g0484 1077 FunFam CDC5 cell division cycle 5-like 60 120 - -
Tan09g0484 1077 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Tan09g0484 1077 MobiDBLite consensus disorder prediction 940 992 - -
Tan09g0484 1077 CDD SANT_CDC5_II 55 106 IPR047240 -
Tan09g0484 1077 Coils Coil 856 876 - -
Tan09g0484 1077 MobiDBLite consensus disorder prediction 382 421 - -
Tan09g0484 1077 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Tan09g0484 1077 MobiDBLite consensus disorder prediction 599 621 - -
Tan09g0484 1077 MobiDBLite consensus disorder prediction 1033 1049 - -
Tan09g0484 1077 MobiDBLite consensus disorder prediction 213 234 - -
Tan09g0484 1077 SMART sant 58 105 IPR001005 -
Tan09g0484 1077 SMART sant 6 55 IPR001005 -
Tan09g0484 1077 Gene3D - 5 59 - -
Tan09g0484 1077 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Tan09g0484 1077 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Tan09g0484 1077 MobiDBLite consensus disorder prediction 895 924 - -
Tan09g0484 1077 Coils Coil 796 846 - -
Tan09g0484 1077 Pfam Myb-like DNA-binding domain 10 70 - -
Tan09g0484 1077 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 807 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Tan09g0484 1077 MobiDBLite consensus disorder prediction 897 922 - -
Tan09g0484 1077 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Tan09g0484 1077 MobiDBLite consensus disorder prediction 113 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0484 K12860 - - csv:101206265 1709.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0484 Tan-Chr9:45481686 Tan09g1842 Tan-Chr9:69769891 5.80E-11 dispersed
Tan09g0484 Tan-Chr9:45481686 Tan09g0485 Tan-Chr9:45481686 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g0484 . 1 830 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1213.0
Tan09g0485 . 1 754 MYB-Related Transcription Factor Family AT1G09770 75.3 6.9e-310 1060.4
Tan09g1842 . 159 625 MYB-Related Transcription Factor Family AT3G18100 55.6 2.6e-150 530.0
Tan09g1842 . 159 625 MYB-Related Transcription Factor Family AT3G18100 55.6 2.6e-150 530.0
Tan09g0484 . 1 830 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1213.0
Tan09g0485 . 1 754 MYB-Related Transcription Factor Family AT1G09770 75.3 6.9e-310 1060.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28280 PF11831 Myb_Cef 3.00E-59 No_clan Tan TF