Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0485 ATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGGGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCCCTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGGAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCGGGTTTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGACGTAGAAGCTCAATTAAGAAAGCAGGATATTGCAAAGAATAAAATTGCTCAGAGGCAGGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCCGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTTCTGGTAATGAAGAGCTTGCAGAAGGAAGTGGTGCTACACGTGCTCTGCTTGCAAATTATGCACAGACACCACGGCAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGGAAAGGTGATGCTATCATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGCTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGTAGCGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCCAAAGGAACACCTATTAGAGATGAGTTACATATCAACGAAGATATGGACGCACATGATAGTGCAAAACTAGAGTCTCAAAGACAAGCTGATTTGAGGAAGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTTGTTATGCAACCAATTCCTGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGATATGTCTGACAGGATAGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTACTTTATTAGAGCATGATAATGCGAAGTACCCGATCGACGAAAAGGTCAACAAGGAGAAAAAGAAAGGTTCCAAGCGCACTGGAAATAGACCTACTGCAGCCATCCCTACAATAGATGATTTTGAAGAAGCTGAGATGGAAGAGGCTGATTATTTGATAAAGGAAGAGGCCCGGTATCTGTGTGTTGCGATGGGGCATGAAAATGAATCCTTAGAGGAATTTGTGGAAGCTCACAAAACGTGCTTAAACGATCTTATGTACTTCCCCACAAGGAATGCTTATGGACTTTCCAGCGTGGCTGGAAACCATGAGAAACTAGCCGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCGACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAACCTTTTGGCGGACTTGGAGAAGATGCAGAAAATCATGGACGAGCGCAAGGCACAGGCTCAAAAGGAAGAAGAAATTGCAGCGGAGAATATCGCTCTTCAGTTGGCCAAGGCTGAGGCAGCACAAAAGGAAGAAGAAAATGCAGTGGAGAATCGCGTTTTTCAGTTGGCCGAGGCTGAGGCAGCACAAAAGGAAGAAGAAATTGCAGTGGATAATCACTCTCTTCAGTTGGCCGAGGCTGAGGCTAATCAAACCGTTGGAGAAAATGCTGATAGTTCTGAAGCTGTGTCTGCATTAGCAGTTGATCGTGAAAATTCTATGCCTGTTACCTCAACTCCCAATGAATTGACGGGTGAACAACCAAACTTGTCTGTGGGGCCCGATCATGAAACTTCTAATGCGATGGATATTGATATAGAGAAAGAAAATGTAGCGATGAGCTCAGATATTGGCTCACCTGATAACAAACTACCTTCAGTTGGAGAGAATGCATCATTGCCTGACAATGGTTTCAAAGATTCTGATATAAGTCAACCCAGTGATGTTCCTCCACAAGAACTCTTGGTCCCTCCTGCAAATAGCAGTCCAGATGTGACCGTTACGGCGGAAGATAAGATCAGCAATGATTCGGTTGATGGAGAAGCAATTGAAAATGCCGAATGTAGTACCGATATTGTGGAGGAAGTCAAAGATGTCAAAGCTCAGCAGCCTGTGATTGAAGCTGGAAACTCGGATGTGAATTCGACTAACCTGGATTCTGCTGCACCTGCACCTTCTAATAAGGATGACCCTGCTTATAACGATAACGTGGAACTCCCTCGTGACGAAGGTGAAGCTACGGGATCAAATGTCTAG 3006 44.98 MPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLSGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDAHDSAKLESQRQADLRKNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLTLLEHDNAKYPIDEKVNKEKKKGSKRTGNRPTAAIPTIDDFEEAEMEEADYLIKEEARYLCVAMGHENESLEEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISGIWEEVQKQKELERTLQLRYGNLLADLEKMQKIMDERKAQAQKEEEIAAENIALQLAKAEAAQKEEENAVENRVFQLAEAEAAQKEEEIAVDNHSLQLAEAEANQTVGENADSSEAVSALAVDRENSMPVTSTPNELTGEQPNLSVGPDHETSNAMDIDIEKENVAMSSDIGSPDNKLPSVGENASLPDNGFKDSDISQPSDVPPQELLVPPANSSPDVTVTAEDKISNDSVDGEAIENAECSTDIVEEVKDVKAQQPVIEAGNSDVNSTNLDSAAPAPSNKDDPAYNDNVELPRDEGEATGSNV 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45481686 45498853 - Tan0001688.2 Tan09g0485 762828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0485 1001 MobiDBLite consensus disorder prediction 951 1001 - -
Tan09g0485 1001 MobiDBLite consensus disorder prediction 523 545 - -
Tan09g0485 1001 MobiDBLite consensus disorder prediction 306 345 - -
Tan09g0485 1001 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 31 IPR017930 -
Tan09g0485 1001 MobiDBLite consensus disorder prediction 821 846 - -
Tan09g0485 1001 MobiDBLite consensus disorder prediction 324 338 - -
Tan09g0485 1001 Coils Coil 91 111 - -
Tan09g0485 1001 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 731 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Tan09g0485 1001 MobiDBLite consensus disorder prediction 819 848 - -
Tan09g0485 1001 MobiDBLite consensus disorder prediction 957 973 - -
Tan09g0485 1001 MobiDBLite consensus disorder prediction 137 158 - -
Tan09g0485 1001 Coils Coil 720 770 - -
Tan09g0485 1001 MobiDBLite consensus disorder prediction 864 916 - -
Tan09g0485 1001 Coils Coil 780 800 - -
Tan09g0485 1001 Pfam pre-mRNA splicing factor component 331 582 IPR021786 -
Tan09g0485 1001 MobiDBLite consensus disorder prediction 81 100 - -
Tan09g0485 1001 MobiDBLite consensus disorder prediction 33 74 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0485 K12860 - - csv:101206265 1553.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0484 Tan-Chr9:45481686 Tan09g0485 Tan-Chr9:45481686 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g0484 . 1 830 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1213.0
Tan09g0485 . 1 754 MYB-Related Transcription Factor Family AT1G09770 75.3 6.9e-310 1060.4
Tan09g1842 . 159 625 MYB-Related Transcription Factor Family AT3G18100 55.6 2.6e-150 530.0
Tan09g1842 . 159 625 MYB-Related Transcription Factor Family AT3G18100 55.6 2.6e-150 530.0
Tan09g0484 . 1 830 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1213.0
Tan09g0485 . 1 754 MYB-Related Transcription Factor Family AT1G09770 75.3 6.9e-310 1060.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49