Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0530 ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTTTTCGAGCAGATTTTGGCGGTGCCACCGGCTTACGGCGGCGGCGATGTGGTGTCTATGCCTATGGCGATGGGGTTGCAACTTTGCTCCGGCGGCGACGGTGGGTTGCAGCAAGGAGGGATGGCTATGCCTTTGGGATTGAATTTAGAACAAGGGTTTTTGAGACAAGAGAGGTTTAGAGATGAGCTTGATGCTCATAATAATAATAATAATAATAATGCTTCCTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGGTTCAGCACATGACCAACTTGTTTCCGACCTTTGGACATTTGCAGACTCAGCCACTCCGCCCACCGCCGCCGTTACATCTCCACCAGCCCTTTCACAATCAGACGACTCCCGGGATGGTTGCTGCGATACCGCAACCACCTCAAGTTCGTCCGAGAGTTCGAGCAAGACGTGGCCAGGCGACCGATCCTCACAGTATTGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAGTTGGTTCCTAGTTGCAACAAGACTGATAGAGCGGCAATGCTCGACGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGCGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCTTATCATCAGTCGAGGTACTAAAAAAATTCAGCTTTGTAGTCCTTTATTTATTAATCTTTTAG 771 48.9 MAGIPSEGLGDDFFEQILAVPPAYGGGDVVSMPMAMGLQLCSGGDGGLQQGGMAMPLGLNLEQGFLRQERFRDELDAHNNNNNNNASSSSTASSGITERDSSVQHMTNLFPTFGHLQTQPLRPPPPLHLHQPFHNQTTPGMVAAIPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEVLKKFSFVVLYLLIF 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48153103 48163766 + Tan0003693.2 Tan09g0530 762873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0530 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Tan09g0530 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 220 IPR036638 GO:0046983(InterPro)
Tan09g0530 256 MobiDBLite consensus disorder prediction 76 99 - -
Tan09g0530 256 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Tan09g0530 256 FunFam Basic helix-loop-helix transcription factor 156 218 - -
Tan09g0530 256 MobiDBLite consensus disorder prediction 144 165 - -
Tan09g0530 256 MobiDBLite consensus disorder prediction 78 99 - -
Tan09g0530 256 Pfam Helix-loop-helix DNA-binding domain 166 211 IPR011598 GO:0046983(InterPro)
Tan09g0530 256 Gene3D - 154 211 IPR036638 GO:0046983(InterPro)
Tan09g0530 256 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 57 221 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0530 Tan-Chr9:48153103 Tan09g1547 Tan-Chr9:67332375 1.70E-33 dispersed
Tan09g0529 Tan-Chr9:48153103 Tan09g0530 Tan-Chr9:48153103 3.30E-124 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28285 PF00010 HLH 5.00E-08 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0530 - - - 0.0