Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0560 ATGGAGGCTTCTTCTCCTTGCTTTTCTGTTTCTCTCATCCTTTTCCTTTTCTTCTTCTCTCAAGAGTCCCTCTGCCAACAGGCGTATGTGGGAAATGGGAGTTGTCCTATCCATGATACTTCAACACCAAAAGAGTACCTTTGCGTTGATTCTATTAACTCATATTGTACTTCATATCTGTTTATCTCCAAATTCCTCACCAACTTTTATACATATGATTACGTTTCACAATCCAATTTCACATTTGGAAAAAATATTTTGTATCCTATTTCCATTAAGTGTGAATGTTTGGGTCCTTCCTATCAGAGTTCAATCCATTACACTATCGAGAGTGGTGATAGTTATGAAAAAATAGTGAAGGACTATTTTCAAGGCATGACGAGTTGCTCAACAGTAATAAGTCAAAACCATGACTTTGCTATCGATAATACTTCTTCCATAGGGAGAAGACTTGTAGTTCCCTTGCGATGTGCTTGTCCTACCAAAGCTCAACAAGCAAATGGGGTTGAGTACTTGGCTTTGTATGTACTACAACCGAATGATACCATTGGATCTGTCGCGACGAATTTGGGTGTTGAGAAAGAACACATCTTGAAAGCAAATAACCTTTCGAATTCAAGCCCCATCAACCCCTTCACGATTATTTTGGTTCCTTTGTCTGACGCTGATGTCTGTAGAATTTTTGGCTGCTACACTTCTTCTTTTACGACATATATCCTTGGATATATATCCAGTATAACAGGTGCTGTCATAGTATTGCTATGCTGTTTCGGTTGTGGATGTAAAGGCCATCAACTACTCATTAAGAAAAGAAGATACAAACTTGGTAAGAAAAAGTTTTTCAAGCAAAATGGTGGCCTCTTATTGCAACAGAAACTACTCAAAGATAGTGAGAGAGTAAAAATATTTACTCAAGAAGAACTTGAACAAGCAACAGATAACTACAGTGAAAGTAGGTTTCTTGGTCAAGGAGGGTATGGAAAAGTTTACAAAGGGATACTTCATGACAATACTTTTGTTGCAATCAAAAGGTCCAAACAAATCGAGACAAATTGGATTGAACAATTTATTAATGAAGTTATTATCCTCTCCCAAATTAACCACAGAAATATTGTTAGACTCTTCGGTTGTTGTTTAGAAACTGAGTTCCCTTTGCTAGTTTATGAATTTGTTTCTAATGGGACACTTTCACACCATATTCTTAAGGAAGATTCCGAAGAATCACCTTCTATTTCTTGGGAAAATCGTCTCAATATCGCTTCTGAGGTCGCAGGAGCTATATCTTACATGCATTATGCAGCTTCAATTCCTATTTTTCATAGAGATATCAAGTCTTTAAACATACTCTTGGACGATAATTATAGCGCAAAGGTTTCTGATTTTGGAACATCAAGATTTGTGTCGTGTGATCAATCTCATTTGACTACAAAAGTGTTGGGAACTTTTGGGTATATAGATCCTGAGTACTTTAGATCAAGTCAATACACTGAAAAGAGTGATGTATACAGCTTTGGAGTCTTGATGGTTGAACTCTTAACTGGGAAGCTACCTGTCACTTTCGCCAAAAATGATGGTAGAAATCTATTAGACTACTTCATTTCGCTGGAAAGGACTAATCAACTCGTTGAAATTCTAGATGTTATAGTGGCCAAGGAAGAAAGGATGGAGGTTGTTAACAATGTTGCAGCGCTTGCCATAAAATGTTTAAAATCAAATGGAAAAGAAAGACCTACGATGAAACAAGTATATTTGGAACTCGAGGGTTTGCGAAAGTCACAAAATTGTTTACGAATTATGGAAAAAAGTCATTCAAAAACATTTTCATTAAACTCCTACGAGATAAGTGACGATGAGCTTCTAAGATGA 1866 36.6 MEASSPCFSVSLILFLFFFSQESLCQQAYVGNGSCPIHDTSTPKEYLCVDSINSYCTSYLFISKFLTNFYTYDYVSQSNFTFGKNILYPISIKCECLGPSYQSSIHYTIESGDSYEKIVKDYFQGMTSCSTVISQNHDFAIDNTSSIGRRLVVPLRCACPTKAQQANGVEYLALYVLQPNDTIGSVATNLGVEKEHILKANNLSNSSPINPFTIILVPLSDADVCRIFGCYTSSFTTYILGYISSITGAVIVLLCCFGCGCKGHQLLIKKRRYKLGKKKFFKQNGGLLLQQKLLKDSERVKIFTQEELEQATDNYSESRFLGQGGYGKVYKGILHDNTFVAIKRSKQIETNWIEQFINEVIILSQINHRNIVRLFGCCLETEFPLLVYEFVSNGTLSHHILKEDSEESPSISWENRLNIASEVAGAISYMHYAASIPIFHRDIKSLNILLDDNYSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPVTFAKNDGRNLLDYFISLERTNQLVEILDVIVAKEERMEVVNNVAALAIKCLKSNGKERPTMKQVYLELEGLRKSQNCLRIMEKSHSKTFSLNSYEISDDELLR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 49622816 49625608 + Tan0006562.1 Tan09g0560 762903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0560 621 Gene3D LysM domain 161 224 IPR036779 -
Tan09g0560 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g0560 621 Gene3D Transferase(Phosphotransferase) domain 1 391 613 - -
Tan09g0560 621 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 74 593 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Tan09g0560 621 FunFam Wall-associated receptor kinase 2 288 390 - -
Tan09g0560 621 CDD STKc_IRAK 321 589 - -
Tan09g0560 621 Coils Coil 294 314 - -
Tan09g0560 621 SUPERFAMILY Protein kinase-like (PK-like) 299 586 IPR011009 -
Tan09g0560 621 SMART serkin_6 315 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g0560 621 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524(InterPro)
Tan09g0560 621 Gene3D Phosphorylase Kinase; domain 1 289 390 - -
Tan09g0560 621 ProSiteProfiles Protein kinase domain profile. 315 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g0560 621 FunFam Wall-associated receptor kinase 2 391 608 - -
Tan09g0560 621 ProSiteProfiles LysM domain profile. 173 217 IPR018392 -
Tan09g0560 621 Pfam Protein kinase domain 315 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g0560 621 SMART LysM_2 174 218 IPR018392 -
Tan09g0560 621 SMART LysM_2 106 154 IPR018392 -
Tan09g0560 621 Pfam LysM domain 175 218 IPR018392 -
Tan09g0560 621 CDD LysM 175 217 IPR018392 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0560 Tan-Chr9:49622816 Tan09g0564 Tan-Chr9:50116318 3.20E-224 dispersed
Tan10g0760 Tan-Chr10:6280105 Tan09g0560 Tan-Chr9:49622816 2.00E-51 dispersed
Tan09g0560 Tan-Chr9:49622816 Tan09g0563 Tan-Chr9:50091053 4.20E-240 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68024 PF00069 Pkinase 1.40E-51 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0560 - - - 0.0