Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0564 ATGGAGGCCTGTTCTTCTCCATACCATACTCTCTCACTCATCCTCTTCCTTTCTTTATTTCCTCAACAATCCCTCTGCCAACAGTCGTATTTAGGAAATGAAACCAGTTGCTCTATCAATAACACAGCTTCAACTCATCCAAAAGAATATGTGTGCACTGATGATTCTATTTACTCATGTGATTCCTATTTGGCTTTCCCTTTCTATCCTTTCTTTGATGACTTTTTTTACTTCAATATAACATTAGGGAATCCAAATTTGTCCATTATTGACATTCGATGTTCTTGTTTGGGTTATTTCTATCAGTATGTCATTTCTTACACTATCAAGAGTGGTGATAGTTATGAAAAGATAGCGAATGGTATTTTTAAAGGACTGACAAGCTGTTCAGCGTTGAAAAATAAGAATGATGACTATCCTATTAATAATACTTCTGCAATTGGTAGAACACTCGAAGTTCCATTGCGATGTGCTTGCCCCACCAAAGCTCAGAACACTACGGGGATTGAGTCCTTGATTGTTTATATGCTGCAACTGAATGAGACCATTGAATCTGTTGCAAGGGATTTTGGGGTTCAAATAAAAAGCATCTTGGAAGCAAACGAGCTTTCGAATTCGAGCCATATCTATCCATTTACGCCTATTTTGGTTCCTTTGGATGGGGGTGGGAAATGTAGAATACTCCCTCATTACTGTCGTTACAGTTCTTACCATTATCCGAGCGAACTTCCATTTATTTTAGTATTCTACGTTTCCATTCCAATAGGTGGCATAATAACATTGCTAAGTTGTTTCTTCTGCGGATGCAAAGGGCATCAAATACTATTGAAGAAAAGAAGACGCAAACTTCATAAGAAAAAATTTTTCAAGCAAAATGGTGGCCTCTTATTGCAAGAAAAACTACTTGAAGATAGTGAGAGAGTAAAAATATTTACACAAGAAGAACTTGAAATAGCAACAGATAACTATAACGAAAGTAGATTTCTTGGTCACGGAGGGTATGGCACGGTTTACAAAGGGACGCTCCATGACGATACCATTGTTGCAATCAAAAGGTCAAAGCAAATCGAGATAAATTGGATCGAACAGTTCATTAATGAAGTTATTGTCCTCTCTCAAATTAACCATAGAAATATTGTTAGGCTTTTGGGTTGTTGTTTAGAAACTGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCTAATGGCACACTTTCGCAGCATATTCACAAGGAAGATCCTGGAGAATCACCATCTCTATCATGGGAAAATCGTCTCAGAATTGCTTCTGAAGTTGCGGGAGCTATATCTTACATGCATTCTGCAGCTTCAATTCCTATCTATCATAGAGATATAAAGTCTTTAAACATACTTTTGGATGAAAACTATAGTGCAAAAGTTTCAGATTTCGGAACATCCAGATTTGTGTCGTGTGATCAATCACATTTGACGACAAAAGTATTGGGAACTTTTGGATATATAGATCCTGAGTACTTCATATCAAGCCAATACACTGACAAGAGTGACGTATATAGCTTTGGAGTCTTAATGGTAGAGCTTTTAACTGGGAAACTACCTGTCAGTTTTGCAAAAAATGATGGTCGAAATCTATTAGACTACTTCATTTTATTGGAGAAGGCTAATAGGCTCACTGAAATTCTAGATATCACAGTAGCCATGGAAGAAAGGATGGAAGTTATTAACCATGTTGCAACACTTGCCACGAAATGTTTAAGATCAAATGGAAAAGAGAGACCGACAATGAAACAAGTATATTTGGAGCTCGAAGGATTGAGAAAGTCACATGATTGTTCAAAAATAAGTGAAGAAATTCAATCCATTGAAACTTCTTCATCATTCTCTCTAGAGGTTGGAGATGACGAGTTTACAGATGATAGCACCATCACATCCATTGAAACTAGGACAACATGA 1929 36.75 MEACSSPYHTLSLILFLSLFPQQSLCQQSYLGNETSCSINNTASTHPKEYVCTDDSIYSCDSYLAFPFYPFFDDFFYFNITLGNPNLSIIDIRCSCLGYFYQYVISYTIKSGDSYEKIANGIFKGLTSCSALKNKNDDYPINNTSAIGRTLEVPLRCACPTKAQNTTGIESLIVYMLQLNETIESVARDFGVQIKSILEANELSNSSHIYPFTPILVPLDGGGKCRILPHYCRYSSYHYPSELPFILVFYVSIPIGGIITLLSCFFCGCKGHQILLKKRRRKLHKKKFFKQNGGLLLQEKLLEDSERVKIFTQEELEIATDNYNESRFLGHGGYGTVYKGTLHDDTIVAIKRSKQIEINWIEQFINEVIVLSQINHRNIVRLLGCCLETEFPLLVYEFVSNGTLSQHIHKEDPGESPSLSWENRLRIASEVAGAISYMHSAASIPIYHRDIKSLNILLDENYSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFISSQYTDKSDVYSFGVLMVELLTGKLPVSFAKNDGRNLLDYFILLEKANRLTEILDITVAMEERMEVINHVATLATKCLRSNGKERPTMKQVYLELEGLRKSHDCSKISEEIQSIETSSSFSLEVGDDEFTDDSTITSIETRTT 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 50116318 50118822 + Tan0004458.1 Tan09g0564 762907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0564 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g0564 642 SUPERFAMILY Protein kinase-like (PK-like) 307 594 IPR011009 -
Tan09g0564 642 Pfam Protein kinase domain 323 590 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g0564 642 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 74 603 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Tan09g0564 642 ProSiteProfiles LysM domain profile. 105 153 IPR018392 -
Tan09g0564 642 ProSiteProfiles Protein kinase domain profile. 323 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g0564 642 Gene3D Transferase(Phosphotransferase) domain 1 399 620 - -
Tan09g0564 642 ProSiteProfiles LysM domain profile. 173 217 IPR018392 -
Tan09g0564 642 SMART LysM_2 106 154 IPR018392 -
Tan09g0564 642 SMART LysM_2 174 218 IPR018392 -
Tan09g0564 642 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524(InterPro)
Tan09g0564 642 FunFam Wall-associated receptor kinase 2 296 398 - -
Tan09g0564 642 Pfam LysM domain 178 218 IPR018392 -
Tan09g0564 642 Gene3D LysM domain 160 222 IPR036779 -
Tan09g0564 642 CDD LysM 173 211 IPR018392 -
Tan09g0564 642 Gene3D Phosphorylase Kinase; domain 1 297 398 - -
Tan09g0564 642 CDD STKc_IRAK 329 597 - -
Tan09g0564 642 FunFam Wall-associated receptor kinase 2 399 617 - -
Tan09g0564 642 SMART serkin_6 323 604 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0560 Tan-Chr9:49622816 Tan09g0564 Tan-Chr9:50116318 3.20E-224 dispersed
Tan09g0564 Tan-Chr9:50116318 Tan09g0569 Tan-Chr9:50384667 3.90E-241 dispersed
Tan09g0563 Tan-Chr9:50091053 Tan09g0564 Tan-Chr9:50116318 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68026 PF00069 Pkinase 7.20E-51 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0564 - - - 0.0