Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0596 ATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCTCTCACGCCATCTTTGCGCGAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCTGTGCGACCTGGAGAGCCAGACTGTTCATATTACATCAGAACTGGCCTCTGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAGGGGGAATTCCCAGAAAGAATTGGACAACCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTACGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGCTCCCCTATTTACCCAACCGTACAATCACCAACTCCTGGTCAGCAGTCATATCCAGGAGGAAGCACAAATTGGTCAAGGGCTTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATTTTACCTCAGGGAGTTCTCTCTGTTCCAGGCTGGAATACATTCAATGATCAGCTAGGATCAGTTTCATCCTCAGAAAGTCCACAGCAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACGGGAGATTGCAAGTTTGGTGCCGTTTGTCGCTTTCATCATCCCAGAGAAAGAGTAATTCCTGCCCCAGATTGTGTCTTGAGTCCAATAGGCCTACCATTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATACAATCTCTCTGCAGCGTCGTCGGCCAATGCGCCGGTTCAACATTTGTTTGGGACGACTTCGGGAACAACTGCACTGAACTTGTCATCTGAAGGGCTAGTTGAAGCAGGATCTGCAAAGCCGAGGCGACTATCACTCACAGAGACTCGAGAGATGCCATCTGACGATGAAAATATCGACGCCGAGGGCTGA 1215 46.67 MEYDSGIPMSVTEGHSSALTPSLREGSLANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTTSGTTALNLSSEGLVEAGSAKPRRLSLTETREMPSDDENIDAEG 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 51699925 51730415 - Tan0001880.1 Tan09g0596 762939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0596 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 337 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 80 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 291 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 171 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 125 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 MobiDBLite consensus disorder prediction 243 261 - -
Tan09g0596 404 SUPERFAMILY CCCH zinc finger 146 172 IPR036855 GO:0046872(InterPro)
Tan09g0596 404 FunFam CCCH type zinc finger protein 262 347 - -
Tan09g0596 404 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 MobiDBLite consensus disorder prediction 379 404 - -
Tan09g0596 404 FunFam Zinc finger nuclease 2 52 129 - -
Tan09g0596 404 SUPERFAMILY CCCH zinc finger 268 293 IPR036855 GO:0046872(InterPro)
Tan09g0596 404 SUPERFAMILY CCCH zinc finger 58 81 IPR036855 GO:0046872(InterPro)
Tan09g0596 404 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 SMART c3hfinal6 53 80 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 SMART c3hfinal6 264 291 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 SMART c3hfinal6 144 171 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 SMART c3hfinal6 98 125 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 SMART c3hfinal6 310 337 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 SUPERFAMILY CCCH zinc finger 102 127 IPR036855 GO:0046872(InterPro)
Tan09g0596 404 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 Gene3D - 143 190 - -
Tan09g0596 404 Gene3D - 253 338 - -
Tan09g0596 404 PANTHER PROTEIN PHOSPHATASE RELATED 25 338 IPR050974 GO:0003729(PANTHER)
Tan09g0596 404 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872(InterPro)
Tan09g0596 404 MobiDBLite consensus disorder prediction 243 264 - -
Tan09g0596 404 Gene3D - 53 136 - -
Tan09g0596 404 SUPERFAMILY CCCH zinc finger 313 337 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2898 Tan-Chr5:81335382 Tan09g0596 Tan-Chr9:51699925 2.50E-22 dispersed
Tan09g0596 Tan-Chr9:51699925 Tan09g0598 Tan-Chr9:51699925 2.90E-133 dispersed
Tan09g0596 Tan-Chr9:51699925 Tan09g0597 Tan-Chr9:51699925 3.20E-172 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28287 PF00642 zf-CCCH 2.70E-10 CL0537 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0596 - - - 0.0