Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0599 ATGAAGGGGGAATTCCCAGAAAGAATTGGACAACCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTACGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGCTCCCCTATTTACCCAACCGTACAATCACCAACTCCTGGTCAGCAGTCATATCCAGGAGGAAGCACAAATTGGTCAAGGGCTTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATTTTACCTCAGGGAGTTCTCTCTGTTCCAGGCTGGAATACATTCAATGATCAGCTAGGATCAGTTTCATCCTCAGAAAGTCCACAGCAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACGGGAGATTGCAAGTTTGGTGCCGTTTGTCGCTTTCATCATCCCAGAGAAAGAGTAATTCCTGCCCCAGATTGTGTCTTGAGTCCAATAGGCCTACCATTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATACAATCTCTCTGCAGCGTCGTCGGCCAATGCGCCGGTTCAACATTTGTTTGGGACGACTTCGGGAACAACTGCACTGAACTTGTCATCTGAAGGGCTAGTTGAAGCAGGATCTGCAAAGCCGAGGCGACTATCACTCACAGAGACTCGAGAGATGCCATCTGACGATGAAAATATCGACGCCGAGGGCTGA 945 46.67 MKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTTSGTTALNLSSEGLVEAGSAKPRRLSLTETREMPSDDENIDAEG 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 51699925 51730415 - Tan0001880.4 Tan09g0599 762942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0599 314 SMART c3hfinal6 174 201 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 SMART c3hfinal6 54 81 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 SMART c3hfinal6 8 35 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 SMART c3hfinal6 220 247 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 ProSiteProfiles Zinc finger C3H1-type profile. 8 36 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 Gene3D - 8 91 - -
Tan09g0599 314 ProSiteProfiles Zinc finger C3H1-type profile. 174 202 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 57 81 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 247 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 175 201 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 11 35 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 Gene3D - 163 248 - -
Tan09g0599 314 SUPERFAMILY CCCH zinc finger 12 37 IPR036855 GO:0046872(InterPro)
Tan09g0599 314 SUPERFAMILY CCCH zinc finger 178 203 IPR036855 GO:0046872(InterPro)
Tan09g0599 314 MobiDBLite consensus disorder prediction 153 174 - -
Tan09g0599 314 MobiDBLite consensus disorder prediction 289 314 - -
Tan09g0599 314 PANTHER PROTEIN PHOSPHATASE RELATED 5 248 IPR050974 GO:0003729(PANTHER)
Tan09g0599 314 MobiDBLite consensus disorder prediction 153 171 - -
Tan09g0599 314 ProSiteProfiles Zinc finger C3H1-type profile. 220 248 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 FunFam CCCH type zinc finger protein 172 257 - -
Tan09g0599 314 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872(InterPro)
Tan09g0599 314 SUPERFAMILY CCCH zinc finger 56 82 IPR036855 GO:0046872(InterPro)
Tan09g0599 314 SUPERFAMILY CCCH zinc finger 223 247 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0597 Tan-Chr9:51699925 Tan09g0599 Tan-Chr9:51699925 2.90E-133 dispersed
Tan09g0599 Tan-Chr9:51699925 Tan10g0978 Tan-Chr10:8544136 9.20E-26 dispersed
Tan09g0598 Tan-Chr9:51699925 Tan09g0599 Tan-Chr9:51699925 1.20E-147 tandem
Tan09g0599 Tan-Chr9:51699925 Tan09g0600 Tan-Chr9:51699925 1.20E-137 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28290 PF00642 zf-CCCH 2.00E-10 CL0537 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0599 - - - 0.0