Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0602 ATGAGGCTTGAAGTGAACGATGGCGATGTTGACGACGTTCTTGTTCCTCCTCCCAACTTCTCCATGGTCGAGGATGGCATTTTCCGATCCAGTTTCCCTCAGCCCCCCAATTTCCCCTTCCTCAAGAACCTCAATCTTCGCTCCATCATATATTTGTGTCCAGAACCTTATCCAGAGGAGAATTTGGAGTTTCTTAGAGCTAATAACATCAAGCTTTTTCAATTCAAAATTGAAGGGAAAAAGGAGCCTTTTGTTTCGATTCAGAAGGATGCTATCCTTGACGCCCTAAAAATCCTAATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGAAAGCATCGAACAGGCTCGCTCGTTGGTTGCCTGAGAAAGTTTCAGAACTGGTGCTTGACTTCGGTGTTCGAGGAGTACCAGCGATTTGCAGGCATGAAGTCGAGGACGACAGATCTACAATTCATCGAGACATTTGACATTACTTCGCTGAGGCAATGCGTTTACAGCATCATATATCAGTACCAAGGTTACAGCTCAAGCAAGAGGAGGCTGGTGTATAGAGAAGAAAAGTTGCAGAAACCCCAGACAACCTCAGTTTAG 603 45.11 MRLEVNDGDVDDVLVPPPNFSMVEDGIFRSSFPQPPNFPFLKNLNLRSIIYLCPEPYPEENLEFLRANNIKLFQFKIEGKKEPFVSIQKDAILDALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGMKSRTTDLQFIETFDITSLRQCVYSIIYQYQGYSSSKRRLVYREEKLQKPQTTSV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 52076011 52078160 + Tan0012662.1 Tan09g0602 762945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0602 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 160 IPR029021 -
Tan09g0602 200 Pfam Tyrosine phosphatase family 14 163 IPR004861 -
Tan09g0602 200 Gene3D Protein tyrosine phosphatase superfamily 13 163 IPR029021 -
Tan09g0602 200 CDD PFA-DSP_Siw14 14 160 - -
Tan09g0602 200 FunFam probable tyrosine-protein phosphatase At1g05000 13 163 - -
Tan09g0602 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311(InterPro)
Tan09g0602 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 184 IPR020422 GO:0006470(InterPro)
Tan09g0602 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
Tan09g0602 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Tan09g0602 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
Tan09g0602 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
Tan09g0602 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 189 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0691 Tan-Chr5:5004130 Tan09g0602 Tan-Chr9:52076011 3.10E-38 dispersed
Tan05g0692 Tan-Chr5:5004130 Tan09g0602 Tan-Chr9:52076011 3.10E-38 dispersed
Tan09g0602 Tan-Chr9:52076011 Tan05g0689 Tan-Chr5:5004130 3.10E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0602 K18045 - csv:101211082 344.739