Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0678 ATGGGTGTTTCAGGAAAATGGTTCAAAGCGCTAGTTGGTTTGAAGAAATCAGAAAAATCTCAGTCTTCAGAACATGATGAAAATGCGAGGACAGTCAGTAACAAGTTTTGGCATCGGAGGAAGCATTCTGTTGATATTGATGCCAATAAACTTCAACAGGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGAAGCTGCTTCTATTCCTTCTGATTCACTTCAAACATGTGATGCATTGCATAGTCGACACGATGATGTTGAAGAACAGGCTGCTATACGTATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGGGCTCTCCGAGCACTGAAAGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGCCATGCTGTCAGAAAACAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGACGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACATCAACTTCAACAACAACTTGAAAATCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGGTCTGTTGAAGAAATTCAAACAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCGATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCTTTTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGCCCATGGGAAAACCGCTTTCTTGATATTAATCTGAGAGATGGAGTGATGATTCGCGAGAATGGATCAGCTGAGGGAAAAAGTAACACTAAATCTCATTCAAAAACTACTGGCAAGAAAACAAACTTAGTGGCTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCACATTCTGATGGATATGGTTCATCATCACCCACTAAGTCAGCTGGCACAGTAGAGGTATCCAGTGCACAGATTCAAAAGCCCAAGTATAAACTTGGACCTGAGAGGCCTTTTGAAGATGTCAAACCTAAAGTAGATACTGGTTTGAGATCTCATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGTTTATCCATGCCTAACAATGTTGCTGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCAGCAGAAGTGCAGGCAAAGCGACCGTGACCAAGTCCATCAACGACAAACCCAAGTCGATTTCAAGAGGTGACTCAAAATCTACAAAACCCAGATCGCAGAATTGA 1314 42.92 MGVSGKWFKALVGLKKSEKSQSSEHDENARTVSNKFWHRRKHSVDIDANKLQQEFNSNFTPFVEESNALSDPEAASIPSDSLQTCDALHSRHDDVEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQHQLQQQLENQARVREIEEGWCDSVGSVEEIQTKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAAFSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSAEGKSNTKSHSKTTGKKTNLVADQSNLSSQKTAASHSDGYGSSSPTKSAGTVEVSSAQIQKPKYKLGPERPFEDVKPKVDTGLRSHSNPKERSTPLVKNAKKRLSMPNNVADPGSQNQTVRNSSRSAGKATVTKSINDKPKSISRGDSKSTKPRSQN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 55436653 55449026 + Tan0016316.1 Tan09g0678 763021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0678 437 SMART iq_5 118 139 IPR000048 GO:0005515(InterPro)
Tan09g0678 437 SMART iq_5 95 117 IPR000048 GO:0005515(InterPro)
Tan09g0678 437 Gene3D - 96 138 - -
Tan09g0678 437 MobiDBLite consensus disorder prediction 280 338 - -
Tan09g0678 437 ProSiteProfiles IQ motif profile. 96 124 - -
Tan09g0678 437 MobiDBLite consensus disorder prediction 389 419 - -
Tan09g0678 437 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515(InterPro)
Tan09g0678 437 PANTHER IQ-DOMAIN 5-RELATED 5 404 - -
Tan09g0678 437 MobiDBLite consensus disorder prediction 346 367 - -
Tan09g0678 437 MobiDBLite consensus disorder prediction 279 437 - -
Tan09g0678 437 ProSiteProfiles IQ motif profile. 120 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2549 Tan-Chr3:78698596 Tan09g0678 Tan-Chr9:55436653 3.70E-35 dispersed
Tan09g0678 Tan-Chr9:55436653 Tan11g0812 Tan-Chr11:6799965 6.40E-33 dispersed
Tan09g0678 Tan-Chr9:55436653 Tan01g4612 Tan-Chr1:112130964 3.40E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0678 - - - 0.0