Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0678 ATGGGTGTTTCAGGAAAATGGTTCAAAGCGCTAGTTGGTTTGAAGAAATCAGAAAAATCTCAGTCTTCAGAACATGATGAAAATGCGAGGACAGTCAGTAACAAGTTTTGGCATCGGAGGAAGCATTCTGTTGATATTGATGCCAATAAACTTCAACAGGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGAAGCTGCTTCTATTCCTTCTGATTCACTTCAAACATGTGATGCATTGCATAGTCGACACGATGATGTTGAAGAACAGGCTGCTATACGTATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGGGCTCTCCGAGCACTGAAAGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGCCATGCTGTCAGAAAACAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGACGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACATCAACTTCAACAACAACTTGAAAATCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGGTCTGTTGAAGAAATTCAAACAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCGATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCTTTTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGCCCATGGGAAAACCGCTTTCTTGATATTAATCTGAGAGATGGAGTGATGATTCGCGAGAATGGATCAGCTGAGGGAAAAAGTAACACTAAATCTCATTCAAAAACTACTGGCAAGAAAACAAACTTAGTGGCTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCACATTCTGATGGATATGGTTCATCATCACCCACTAAGTCAGCTGGCACAGTAGAGGTATCCAGTGCACAGATTCAAAAGCCCAAGTATAAACTTGGACCTGAGAGGCCTTTTGAAGATGTCAAACCTAAAGTAGATACTGGTTTGAGATCTCATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGTTTATCCATGCCTAACAATGTTGCTGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCAGCAGAAGTGCAGGCAAAGCGACCGTGACCAAGTCCATCAACGACAAACCCAAGTCGATTTCAAGAGGTGACTCAAAATCTACAAAACCCAGATCGCAGAATTGA 1314 42.92 MGVSGKWFKALVGLKKSEKSQSSEHDENARTVSNKFWHRRKHSVDIDANKLQQEFNSNFTPFVEESNALSDPEAASIPSDSLQTCDALHSRHDDVEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQHQLQQQLENQARVREIEEGWCDSVGSVEEIQTKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAAFSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSAEGKSNTKSHSKTTGKKTNLVADQSNLSSQKTAASHSDGYGSSSPTKSAGTVEVSSAQIQKPKYKLGPERPFEDVKPKVDTGLRSHSNPKERSTPLVKNAKKRLSMPNNVADPGSQNQTVRNSSRSAGKATVTKSINDKPKSISRGDSKSTKPRSQN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 55436653 55449026 + Tan0016316.1 Tan09g0678 763021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0678 437 SMART iq_5 118 139 IPR000048 GO:0005515(InterPro)
Tan09g0678 437 SMART iq_5 95 117 IPR000048 GO:0005515(InterPro)
Tan09g0678 437 Gene3D - 96 138 - -
Tan09g0678 437 MobiDBLite consensus disorder prediction 280 338 - -
Tan09g0678 437 ProSiteProfiles IQ motif profile. 96 124 - -
Tan09g0678 437 MobiDBLite consensus disorder prediction 389 419 - -
Tan09g0678 437 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515(InterPro)
Tan09g0678 437 PANTHER IQ-DOMAIN 5-RELATED 5 404 - -
Tan09g0678 437 MobiDBLite consensus disorder prediction 346 367 - -
Tan09g0678 437 MobiDBLite consensus disorder prediction 279 437 - -
Tan09g0678 437 ProSiteProfiles IQ motif profile. 120 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0678 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2549 Tan-Chr3:78698596 Tan09g0678 Tan-Chr9:55436653 3.70E-35 dispersed
Tan09g0678 Tan-Chr9:55436653 Tan11g0812 Tan-Chr11:6799965 6.40E-33 dispersed
Tan09g0678 Tan-Chr9:55436653 Tan01g4612 Tan-Chr1:112130964 3.40E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0574 . 3 175 IQD Protein Family AT3G09710 55.4 1.8e-46 184.5
Tan11g0812 . 1 479 IQD Protein Family AT3G52290 54.0 5.7e-103 372.1
Tan04g0574 . 3 176 IQD Protein Family AT2G26410 52.0 2.0e-41 167.9
Tan09g0678 . 1 411 IQD Protein Family AT3G22190 56.9 1.3e-94 344.4
Tan01g4612 . 1 438 IQD Protein Family AT2G26180 61.1 2.5e-119 426.4
Tan03g2549 . 1 279 IQD Protein Family AT2G33990 52.6 7.7e-66 248.1
Tan01g0850 . 40 223 IQD Protein Family AT2G33990 54.5 7.7e-50 194.9
Tan03g2549 . 1 254 IQD Protein Family AT3G15050 50.2 3.6e-60 229.2
Tan01g0850 . 43 216 IQD Protein Family AT3G15050 63.8 7.1e-56 214.9
Tan11g1579 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan11g1580 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan10g0024 . 1 507 IQD Protein Family AT4G00820 55.4 7.6e-129 458.4
Tan10g0025 . 15 434 IQD Protein Family AT4G00820 63.1 2.0e-121 433.7
Tan10g0024 . 1 507 IQD Protein Family AT1G01110 52.2 1.7e-125 447.2
Tan10g0025 . 13 434 IQD Protein Family AT1G01110 57.9 1.2e-118 424.5
Tan06g0233 . 1 395 IQD Protein Family AT3G16490 52.8 4.3e-73 272.7
Tan09g1205 . 1 395 IQD Protein Family AT3G16490 50.6 7.6e-70 261.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42