Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0742 ATGGGATTTCTGATTCATCAAGTGTTTGAACTCTGTTTTCTTGGCTTTTTCTTTTTTTGCGTTGTTACAGGTTTCCAAGTGTGTCATTCACTTGGTGGAGGCACTGGTTCTGGAATGGGGACTCTGCTGATTTCCAAAATCAGAGAAGAATATCCGGACAGGATGTTGCTTACTTTCTCCGTCTTCCCTTCACCAAAAGTGTCAGATACTGTTGTAGAGCCGTACAATGCCACACTTTCCGTTCACCAGCTTGTTGAGAATGCGGATGAGTGCATGGTACTGGACAATGAAGCATTATATGATATTTGCTTCAGGACTCTCAAGTTAACTACTCCTAGCTTTGGGGATCTCAACCATTTAATTTCTGCTACAATGAGTGGGGTGACATGCTGTCTCAGATTTCCTGGCCAGCTTAACTCTGACCTCAGAAAACTTGCAGTGAATCTAATTCCCTTTCCTCGTCTACACTTCTTTATGGTGGGATTTGCTCCTCTTACCTCACGTGGGTCGCAGCTATATAGGGCACTGACCGTCCCAGAGTTGACACAACAAATGTGGGATTCTAAAAACATGATGTGCGCTGCAGATCCACGACATGGCCGATACCTCACTGCCTCTGCCATGTTCAGAGGCAAGATGAGTACCAAAGAAGTTGATGAACAGATGATCAATGTTCAGAACAAGAATTCCTCATACTTCGTCGAATGGATTCCAAACAATGTTAAATCGAGTGTCTGTGACATTGCTCCAAAAGGACTTTCCATGGCGTCGACTTTCATTGGAAACTCAACCTCCATCCAGGAAATGTTTAGACGTGTGAGCGAGCAGTTCACTGCCATGTTCAGGAGGAAAGCTTTCTTGCACTGGTACACTGGAGAAGGAATGGACGAAATGGAGTTCACCGAGGCGGAAAGCAACATGAATGATCTTGTTTCTGAGTATCAGCAGTACCAGGACGCCACAGCTGATGAGGAGTATTACGAAGAAGACGAAGAAGAGGAGCCTGAAAGCGAAAATGAGTAA 1023 44.77 MGFLIHQVFELCFLGFFFFCVVTGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQLYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPKGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEYYEEDEEEEPESENE 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 57461889 57464108 + Tan0015410.2 Tan09g0742 763085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0742 340 SMART Tubulin_4 1 136 IPR003008 GO:0005525(InterPro)
Tan09g0742 340 MobiDBLite consensus disorder prediction 318 340 - -
Tan09g0742 340 Gene3D Tubulin/FtsZ, GTPase domain 19 154 IPR036525 -
Tan09g0742 340 Pfam Tubulin/FtsZ family, GTPase domain 22 103 IPR003008 GO:0005525(InterPro)
Tan09g0742 340 Coils Coil 300 320 - -
Tan09g0742 340 SUPERFAMILY Tubulin nucleotide-binding domain-like 23 135 IPR036525 -
Tan09g0742 340 SMART Tubulin_C_4 138 275 IPR018316 -
Tan09g0742 340 FunFam Tubulin beta class I 39 155 - -
Tan09g0742 340 PRINTS Beta-tubulin signature 44 56 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Beta-tubulin signature 239 262 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Beta-tubulin signature 157 173 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Beta-tubulin signature 203 221 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Beta-tubulin signature 104 116 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Beta-tubulin signature 269 280 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Beta-tubulin signature 122 131 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Beta-tubulin signature 304 322 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Beta-tubulin signature 137 150 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Beta-tubulin signature 221 235 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 32 38 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 CDD beta_tubulin 43 318 - -
Tan09g0742 340 Pfam Tubulin C-terminal domain 153 274 IPR018316 -
Tan09g0742 340 MobiDBLite consensus disorder prediction 322 340 - -
Tan09g0742 340 FunFam Tubulin beta chain 156 265 - -
Tan09g0742 340 PANTHER TUBULIN 23 318 IPR000217 GO:0000226(PANTHER)|GO:0000278(PANTHER)|GO:0005200(PANTHER)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0005874(InterPro)|GO:0005874(PANTHER)|GO:0007017(InterPro)
Tan09g0742 340 FunFam Tubulin beta chain 266 327 - -
Tan09g0742 340 PRINTS Tubulin signature 82 102 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Tubulin signature 262 290 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Tubulin signature 24 42 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Tubulin signature 68 81 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 PRINTS Tubulin signature 43 64 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Tan09g0742 340 SUPERFAMILY Tubulin C-terminal domain-like 136 321 IPR008280 -
Tan09g0742 340 Gene3D - 155 265 IPR037103 -
Tan09g0742 340 Gene3D Helix hairpin bin 266 322 IPR023123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0742 K07375 - - csv:101221614 600.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0742 Tan-Chr9:57461889 Tan10g1560 Tan-Chr10:24589338 3.20E-72 dispersed
Tan09g0741 Tan-Chr9:57460115 Tan09g0742 Tan-Chr9:57461889 5.50E-181 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g5 . Blo03g01398 . . . . Bma14g00742 Bma07g01371 Cmo10g00829 Cmo11g00777 Cma10g00802 . . . . . Cpe18g00278 Bhi02g01439 Tan09g0742 . . . . . . . . . . . . . Cone5ag1410 . . Lsi06g00378 . . . . . Bda07g00772 Bda09g00340 . Bpe11g00947 Bma07g00328 . . . . Cma11g00768 . . . . Cpe04g00992 . . . . . . . Cla03g01411 Cam03g1491 Cec03g1529 Cco03g1523 Clacu03g1514 Cmu03g2071 Cre03g1743 . Csa01g03033 Chy02g01313 Cme02g00345
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220