Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan09g0832 | ATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGAATCTGATCCAAATGGTGCTCCATCCACAAGTATCTATTATGAACCCTGGTGGCGTGGTATTGGTTACAATCCTATTCCGTTACCTGTAGTAGGGGGAAATGCATCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAATGATGGCCAGTCTGTGTCTAATAATGACGTAAATGATGAAGAAGATGATGTTTCCAAAGAAATACAAGCTACTGGATCTCCACCTTCTGCTGGAAGTTACAGACAGGATGCTCAGAAGATGCTGCATGTTTCATCTACATTGCCAGCTATGCACGGTGAATGTCTGACACAGTCTACACAACTTGAACTTGTTGGCCACTCTATTGCATGTGCGTCAAATCCGTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGCCATCAGCCCTTGGGCTATCCTATGGTTGGAGCACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACGAGGGGTAGTGGAGGGCGTTTCGCCAAGAAAAATGAAGCTGATGGAAAGGAGATGCATTCCGATAAAGTAAACGAGAGTGGTTACCGCCTAAACAACGGTTCTGAACAGCATAACGGAAGCTTCTTGACGACCAAGGCCTCTGAGTAG | 816 | 45.59 | MQSKSETNNQLESDPNGAPSTSIYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEIQATGSPPSAGSYRQDAQKMLHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKNEADGKEMHSDKVNESGYRLNNGSEQHNGSFLTTKASE | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 59520094 | 59525038 | - | Tan0002323.1 | Tan09g0832 | 763175 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan09g0832 | 271 | MobiDBLite | consensus disorder prediction | 228 | 247 | - | - | |
Tan09g0832 | 271 | Gene3D | - | 173 | 235 | - | - | |
Tan09g0832 | 271 | MobiDBLite | consensus disorder prediction | 248 | 271 | - | - | |
Tan09g0832 | 271 | MobiDBLite | consensus disorder prediction | 39 | 98 | - | - | |
Tan09g0832 | 271 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 178 | 198 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Tan09g0832 | 271 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 16 | 259 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Tan09g0832 | 271 | MobiDBLite | consensus disorder prediction | 212 | 227 | - | - | |
Tan09g0832 | 271 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Tan09g0832 | 271 | PRINTS | CCAAT-binding transcription factor subunit B signature | 176 | 198 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan09g0832 | 271 | PRINTS | CCAAT-binding transcription factor subunit B signature | 207 | 230 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan09g0832 | 271 | MobiDBLite | consensus disorder prediction | 42 | 69 | - | - | |
Tan09g0832 | 271 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Tan09g0832 | 271 | ProSiteProfiles | NF-YA/HAP2 family profile. | 173 | 233 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan09g0832 | 271 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 176 | 230 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan09g0832 | 271 | SMART | cbf3 | 172 | 233 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan09g0832 | 271 | MobiDBLite | consensus disorder prediction | 212 | 271 | - | - | |
Tan09g0832 | 271 | MobiDBLite | consensus disorder prediction | 84 | 98 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g0340 | Tan-Chr3:49446703 | Tan09g0832 | Tan-Chr9:59520094 | 1.90E-27 | dispersed | |
Tan06g0580 | Tan-Chr6:4461910 | Tan09g0832 | Tan-Chr9:59520094 | 2.40E-42 | dispersed | |
Tan08g0035 | Tan-Chr8:491171 | Tan09g0832 | Tan-Chr9:59520094 | 2.70E-26 | dispersed | |
Tan08g1611 | Tan-Chr8:65552975 | Tan09g0832 | Tan-Chr9:59520094 | 5.50E-21 | dispersed | |
Tan08g1612 | Tan-Chr8:65553165 | Tan09g0832 | Tan-Chr9:59520094 | 5.50E-21 | dispersed | |
Tan07g0753 | Tan-Chr7:12108676 | Tan09g0832 | Tan-Chr9:59520094 | 2.60E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28302 | PF02045 | CBFB_NFYA | 2.00E-26 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan09g0832 | K08064 | - | csv:101212860 | 476.478 |