Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0832 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGAATCTGATCCAAATGGTGCTCCATCCACAAGTATCTATTATGAACCCTGGTGGCGTGGTATTGGTTACAATCCTATTCCGTTACCTGTAGTAGGGGGAAATGCATCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAATGATGGCCAGTCTGTGTCTAATAATGACGTAAATGATGAAGAAGATGATGTTTCCAAAGAAATACAAGCTACTGGATCTCCACCTTCTGCTGGAAGTTACAGACAGGATGCTCAGAAGATGCTGCATGTTTCATCTACATTGCCAGCTATGCACGGTGAATGTCTGACACAGTCTACACAACTTGAACTTGTTGGCCACTCTATTGCATGTGCGTCAAATCCGTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGCCATCAGCCCTTGGGCTATCCTATGGTTGGAGCACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACGAGGGGTAGTGGAGGGCGTTTCGCCAAGAAAAATGAAGCTGATGGAAAGGAGATGCATTCCGATAAAGTAAACGAGAGTGGTTACCGCCTAAACAACGGTTCTGAACAGCATAACGGAAGCTTCTTGACGACCAAGGCCTCTGAGTAG 816 45.59 MQSKSETNNQLESDPNGAPSTSIYYEPWWRGIGYNPIPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEIQATGSPPSAGSYRQDAQKMLHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKNEADGKEMHSDKVNESGYRLNNGSEQHNGSFLTTKASE 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 59520094 59525038 - Tan0002323.1 Tan09g0832 763175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0832 271 MobiDBLite consensus disorder prediction 228 247 - -
Tan09g0832 271 Gene3D - 173 235 - -
Tan09g0832 271 MobiDBLite consensus disorder prediction 248 271 - -
Tan09g0832 271 MobiDBLite consensus disorder prediction 39 98 - -
Tan09g0832 271 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Tan09g0832 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 259 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan09g0832 271 MobiDBLite consensus disorder prediction 212 227 - -
Tan09g0832 271 MobiDBLite consensus disorder prediction 1 20 - -
Tan09g0832 271 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g0832 271 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g0832 271 MobiDBLite consensus disorder prediction 42 69 - -
Tan09g0832 271 MobiDBLite consensus disorder prediction 1 22 - -
Tan09g0832 271 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g0832 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g0832 271 SMART cbf3 172 233 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g0832 271 MobiDBLite consensus disorder prediction 212 271 - -
Tan09g0832 271 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0340 Tan-Chr3:49446703 Tan09g0832 Tan-Chr9:59520094 1.90E-27 dispersed
Tan06g0580 Tan-Chr6:4461910 Tan09g0832 Tan-Chr9:59520094 2.40E-42 dispersed
Tan08g0035 Tan-Chr8:491171 Tan09g0832 Tan-Chr9:59520094 2.70E-26 dispersed
Tan08g1611 Tan-Chr8:65552975 Tan09g0832 Tan-Chr9:59520094 5.50E-21 dispersed
Tan08g1612 Tan-Chr8:65553165 Tan09g0832 Tan-Chr9:59520094 5.50E-21 dispersed
Tan07g0753 Tan-Chr7:12108676 Tan09g0832 Tan-Chr9:59520094 2.60E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28302 PF02045 CBFB_NFYA 2.00E-26 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0832 K08064 - csv:101212860 476.478