Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0870 ATGGAGAATCTTATGATGGTTGATGATACTTTGGGAGATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATTGAAGCAGAGGATCTGGAGAAGCGTATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAAAGGCAGAAGATTGCTGCACAGCAGGCTGCGGAGAAGCAGAAACCAAAACAGACATCCGACCAGGCTCGGAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTATATGCTGAAACTGATGGAAGTATGCAAAGCCCGGGGATTTGTATATGGCATTATACCTGAAAAGGGGAAACCAGTTAGTGGTGCTTCTGATAACATTCGAGCATGGTGGAAAGAAAAAGTTAAATTCGATAAGAATGGACCGGCTGCAATAGCCAAGTATGAAGCAGAATGTCTTGCCAAGGGAGAGGCAGATGGCAATGGAAACAGTAATTCCCAAAGCGTTCTTCAAGACCTTCAGGATGCGACACTTGGGTCTCTTTTGTCTTCTTTGATGCAACATTGTGATCCCCCTCAGCGGAAGTACCCTTTAGAAAAGGGAGTTCCTCCACCCTGGTGGCCCTCTGGAAATGAAGATTGGTGGGCAAAACTTGGGCTATCCCATGGCAATAGTCCTCCTTATAAGAAGCCTCATGATTTGAAGAAGATGTGGAAAGTCGGGGTTTTAACAGCTGTGATAAAACATATGTCACCTGATATCGCAAAGATAAGGAGGCACGTACGGCAGTCAAAGTGCTTACAAGACAAGATGACAGCAAAGGAGAGTGCAATTTGGTTGGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCAAGCAGTGATAATGGGGCATCTGGAATAACAGAGACCCCAGTAGGTGGTCGTGGTGAAAAGCAAGCTGCAGTAACTAGTGACAGTGATTATGATGTTGATCTTGCTGATGATGGTGTCGGGTCAGTTTCTTCTAAAGACAGGAGAAATCGATCAGTGGATGCAGAGCCATCCAGTAATCTTGGCAATAATGATCCTCAACCTGCTCAAGGAAAAGAGCAAGGTGAAAAGCATAGAAGAAAAAGACAACGTAGTAGCAGGACAAAACCTGCCGATCAAACACTGGCTCCATCTCGGAATGAAGAAGAACCAGGAATCGAACCAACAAATACTCATCTAGATATAAACCATTCTGATGTACCATTAGATAGATTTGAAATTTCAGGAAACCAACCGCAAATTGATACTGTCACAGCTTTGAGGCCACTGGAGAAGGATATGGATGTCCGATCAGAAGTACCAGCTCCCCGGTTTAACATGTTCTCCACGACGTCCTCAAATAATATCAACATAATTTCCACTCAGAGCATGTATGTTGATGGAAGGCCTTTGTTGTATCCTGTAATGCAGAATGCTGAGGCGCAACATGAAAGTGCTTACAATATATATAATCCACCAGTGGAATATAGATCCAATTATGATGTGCAGCACCCTCAATTTGTTAATGAGCCTCAAATGAGATTGGAGGAAGGAGCGCATGTGCCAACACAACATAGAAACGATGAGATTATAGGAGGAGATTTCAACTATGTAAAAGAAACGTTCAACACTGAACAAGATAGGCCTGTTGATACACAGTTTGGATCACCAATCAACAGTCTCTCATTAGATTATGGAGCATTTAATAGTCCGTTCCATCTTGGAATCGATGGTGCAAGCTCGTTTGATGACTTTTTGGTTGATGACGATTTGATCCAATACTTCGGAGCTTAG 1809 42.84 MENLMMVDDTLGDCSDMEVDDIRCDNIAEKDVSDEEIEAEDLEKRMWKDRIKLKRIKERQKIAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAKGEADGNGNSNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWAKLGLSHGNSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASGITETPVGGRGEKQAAVTSDSDYDVDLADDGVGSVSSKDRRNRSVDAEPSSNLGNNDPQPAQGKEQGEKHRRKRQRSSRTKPADQTLAPSRNEEEPGIEPTNTHLDINHSDVPLDRFEISGNQPQIDTVTALRPLEKDMDVRSEVPAPRFNMFSTTSSNNINIISTQSMYVDGRPLLYPVMQNAEAQHESAYNIYNPPVEYRSNYDVQHPQFVNEPQMRLEEGAHVPTQHRNDEIIGGDFNYVKETFNTEQDRPVDTQFGSPINSLSLDYGAFNSPFHLGIDGASSFDDFLVDDDLIQYFGA 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 60008748 60011761 - Tan0005285.2 Tan09g0870 763213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0870 602 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 565 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Tan09g0870 602 MobiDBLite consensus disorder prediction 62 85 - -
Tan09g0870 602 FunFam Ethylene insensitive 3-like 1 161 297 - -
Tan09g0870 602 Pfam Ethylene insensitive 3, DNA-binding domain 40 287 IPR047091 GO:0003700(InterPro)
Tan09g0870 602 MobiDBLite consensus disorder prediction 347 362 - -
Tan09g0870 602 FunFam Ethylene insensitive 3-like 1 74 152 - -
Tan09g0870 602 MobiDBLite consensus disorder prediction 289 407 - -
Tan09g0870 602 Coils Coil 25 59 - -
Tan09g0870 602 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Tan09g0870 602 Gene3D - 74 152 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Tan09g0870 602 Gene3D - 159 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0870 K14514 - - csv:101210347 1045.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0870 Tan-Chr9:60008748 Tan11g1054 Tan-Chr11:8290917 9.50E-96 dispersed
Tan09g0869 Tan-Chr9:60008748 Tan09g0870 Tan-Chr9:60008748 0.00E+00 tandem
Tan09g0870 Tan-Chr9:60008748 Tan09g0871 Tan-Chr9:60008748 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g0930 . 2 627 EIL Transcription Factor Family AT2G27050 58.6 2.4e-192 669.5
Tan11g1054 . 8 506 EIL Transcription Factor Family AT2G27050 62.2 1.6e-169 593.6
Tan11g1055 . 8 506 EIL Transcription Factor Family AT2G27050 62.2 1.6e-169 593.6
Tan11g1056 . 8 506 EIL Transcription Factor Family AT2G27050 62.2 1.6e-169 593.6
Tan09g0869 . 66 354 EIL Transcription Factor Family AT2G27050 59.3 6.2e-92 335.9
Tan09g0870 . 66 354 EIL Transcription Factor Family AT2G27050 59.3 6.2e-92 335.9
Tan09g0871 . 66 354 EIL Transcription Factor Family AT2G27050 59.3 6.2e-92 335.9
Tan09g0869 . 70 327 EIL Transcription Factor Family AT5G21120 51.5 2.6e-73 273.9
Tan09g0870 . 70 327 EIL Transcription Factor Family AT5G21120 51.5 2.6e-73 273.9
Tan09g0871 . 70 327 EIL Transcription Factor Family AT5G21120 51.5 2.6e-73 273.9
Tan09g0869 . 58 577 EIL Transcription Factor Family AT1G73730 54.5 3.1e-141 499.6
Tan09g0870 . 58 577 EIL Transcription Factor Family AT1G73730 54.5 3.1e-141 499.6
Tan09g0871 . 58 577 EIL Transcription Factor Family AT1G73730 54.5 3.1e-141 499.6
Tan09g0930 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 3.0e-104 376.7
Tan11g1054 . 40 335 EIL Transcription Factor Family AT1G73730 62.3 1.1e-103 374.8
Tan11g1055 . 40 335 EIL Transcription Factor Family AT1G73730 62.3 1.1e-103 374.8
Tan11g1056 . 40 335 EIL Transcription Factor Family AT1G73730 62.3 1.1e-103 374.8
Tan09g0930 . 3 627 EIL Transcription Factor Family AT3G20770 62.0 6.0e-210 728.0
Tan11g1054 . 7 504 EIL Transcription Factor Family AT3G20770 62.9 3.6e-170 595.9
Tan11g1055 . 7 504 EIL Transcription Factor Family AT3G20770 62.9 3.6e-170 595.9
Tan11g1056 . 7 504 EIL Transcription Factor Family AT3G20770 62.9 3.6e-170 595.9
Tan09g0869 . 66 292 EIL Transcription Factor Family AT3G20770 71.6 6.0e-93 339.3
Tan09g0870 . 66 292 EIL Transcription Factor Family AT3G20770 71.6 6.0e-93 339.3
Tan09g0871 . 66 292 EIL Transcription Factor Family AT3G20770 71.6 6.0e-93 339.3
Tan09g0869 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.2e-70 264.2
Tan09g0870 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.2e-70 264.2
Tan09g0871 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.2e-70 264.2
Tan09g0869 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
Tan09g0870 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
Tan09g0871 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008299 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28306 PF04873 EIN3 2.00E-127 No_clan Tan TF