Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0929 ATGTTCGGGATTGTGGCGGAGGCGGTGACCGTGGCGGTCGTGGCGGTCGGGTGGTTGTTATGTGGAATCGAGGGTAGACATCCGGTGATGCATAAGGTTGGAGGAGGAAAATATACATGGACAACTAATATTAACTTCACTCATTGGTCAATTCATGAGCACTTTTATGTTGGTGATTGGCTTTATTTCGGGTTCGATAAGCATATCTACAACGTGCTCGAAGTGAACAAAACAAGCTATGAGAGTTGCAATGAAAAGGATTTCATTTTGAACATAACAAAAGGAGGAAGAGATGTGTTCAATCTAACAGAAGCAAAGCCATATTACTTTCTAAGTGGAAGAGGGTTTTGCTTTCAAGGAATGAAGGTTGCTGTCTTTGTTGAAGAATCTCCTCCCCCTTCTCCCATTTCACCACCAAAAATTTCCAATTTTTCTCCATCTATACAACCATTATTATTATTGCCTTTCTCCTTCTTTCTACTCACCATTATTAGGGGTATTATTGATAGAATAATTATATATATATATATATGTTGA 537 38.92 MFGIVAEAVTVAVVAVGWLLCGIEGRHPVMHKVGGGKYTWTTNINFTHWSIHEHFYVGDWLYFGFDKHIYNVLEVNKTSYESCNEKDFILNITKGGRDVFNLTEAKPYYFLSGRGFCFQGMKVAVFVEESPPPSPISPPKISNFSPSIQPLLLLPFSFFLLTIIRGIIDRIIIYIYIC 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 61293572 61295803 - Tan0020895.1 Tan09g0929 763272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0929 178 FunFam Lamin-like protein 27 130 - -
Tan09g0929 178 ProSiteProfiles Phytocyanin domain profile. 29 129 IPR003245 GO:0009055(InterPro)
Tan09g0929 178 PANTHER BLUE COPPER PROTEIN 15 128 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Tan09g0929 178 SUPERFAMILY Cupredoxins 29 127 IPR008972 -
Tan09g0929 178 Gene3D - 29 131 IPR008972 -
Tan09g0929 178 Pfam Plastocyanin-like domain 40 121 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0929 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1428 Tan-Chr2:54276178 Tan09g0929 Tan-Chr9:61293572 1.50E-28 dispersed
Tan07g1189 Tan-Chr7:44194854 Tan09g0929 Tan-Chr9:61293572 1.90E-36 dispersed
Tan07g1192 Tan-Chr7:44954370 Tan09g0929 Tan-Chr9:61293572 1.90E-36 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4518 . 11 132 Phytocyanin Superfamily AT3G20570 57.7 5.8e-37 151.8
Tan01g4385 . 2 159 Phytocyanin Superfamily AT5G53870 50.6 6.0e-37 152.5
Tan05g2299 . 22 156 Phytocyanin Superfamily AT1G48940 54.8 2.7e-38 156.0
Tan02g1428 . 17 129 Phytocyanin Superfamily AT3G01070 64.0 4.8e-37 151.8
Tan02g1428 . 17 180 Phytocyanin Superfamily AT5G15350 52.7 1.2e-46 183.7
Tan05g2299 . 20 132 Phytocyanin Superfamily AT3G18590 65.2 1.1e-37 154.1
Tan01g4385 . 2 159 Phytocyanin Superfamily AT5G53870 50.6 6.0e-37 152.5
Tan05g2299 . 20 132 Phytocyanin Superfamily AT3G18590 65.2 1.1e-37 154.1
Tan05g2299 . 22 156 Phytocyanin Superfamily AT1G48940 54.8 2.7e-38 156.0
Tan01g4518 . 11 132 Phytocyanin Superfamily AT3G20570 57.7 5.8e-37 151.8
Tan02g1428 . 17 129 Phytocyanin Superfamily AT3G01070 64.0 4.8e-37 151.8
Tan02g1428 . 17 180 Phytocyanin Superfamily AT5G15350 52.7 1.2e-46 183.7
Tan07g0828 . 19 220 Phytocyanin Superfamily AT1G08500 54.4 2.6e-54 209.5
Tan09g0929 . 30 134 Phytocyanin Superfamily AT2G27035 59.0 1.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49