Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0930 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCCGCTCCAATTGTAGAAGGAGATGCCGTAGCTCCACCAGCCGATCCTGAAGTCGTGGTGGAAGATGATTATTCTGATGAAGATATCGATCTCGATGAGCTCGAGAGGAGGATGTGGAGGGATAAGATGCGTCTCAAACGCCTTAAAGAGCAGAGCAAAGTTAAGGAAGGGATCGATATTGCGAAGCAGCGACAATCTCAAGATCAGGCTAGGAGGAAGAAGATGTCGAGGGCACATGACGGGATCTTGAAGTACATGTTGAAGATTATGGAAGTATGTAATGCTCAAGGTTTTGTATATGGAATAATTCCAGAGAAGGGAAAACCAGTTACCGGGGCATCAGATAATCTGCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAACGGACCGGCTGCCATAGCCAAGTACCAGGCAGATAATGCAATTCCCGGACGAAACGATGGGTGTAATTCAATCGGACCAACTCCACACACCTTGCAGGAACTTCAGGATACAACCCTTGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTCCTCCACCATGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTCGGGTTGCCGAAGGACCAAGGTCCTCCACCTTACAAGAAGCCTCACGACTTGAAGAAAGCATGGAAAGTCGGTGTTTTGACTGCGGTCATCAAACATATGTCCCCTGATATAGCCAAGATCCGCAAGCTTGTTAGGCAGTCTAAATGTTTGCAGGACAAGATGACTGCTAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAAGAGGAGGTCTTGGCTCGGGAGCTCTATCCTGACTCTTGCCCGCCATTATCATCTGGTGGGGGAAGTGGATCGATGGTCATAAACGATTGCAGTGAGTATGATGTAGAAGGTGCTGAGGAGGAACCAAACTTTGATGTTCAAGATCGTAAACCTGATAACCATAGCTCATTCAACTTGGGAATGGAGAGAATTAGAGAACGGGTGCCCCTTAGACAACCACCTTACACAATCAAAGGAGAGGTTGCCACAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAACATGATGATGGATCAGAAAATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTCCGTCTCGGGTTTAATGACAGGACGTCCAGAGACAATCATCAGTTGACTTGCCCGTACAGAACTTCTTCAGAGTTCAGTGGTTCAAATTTTCATGTCAATGAGGTCAAACCAGTTATCTTCCCTCAATCGTTCGCCCCACCCAAGCCAGCTCCACCCCCAGTCAGCTCGGTTCCATCCTCTTTTGACTTGTCCAGCTTAGGAGTTCCAGAAGATGGCCAAAAGCTCATCAGTGATCTCATGTCGATCTATGACACCAACATCCAAGGCAACAAGAACAATGTAAACTCTGGTAACGGTGCCATCACAGAGAACCAAAATCTTTCTCAGTTGAAGATCCAATCTCAACAAGACGAATACTTCCGAAATCAAGGAATAATGATCGAGGGAAACTTCTTCGAAGGATCGAACGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGACCGGTTTAAGCCAATGAATTCACCTTTTGAAAACAACCACCACCACCATCACCACAACAATAACAACAACAACTTCCACTTGATGTTTGGCTCTCCATTTGATTTGTCGACTTTCGATTACAAAGAAGAAGTACCCGGAGCAGCAGCCATCGATACACTGTCAAAACAGCAGGATATTCCCTTGTGGTATCAGTAA 1887 45.84 MMMMFNEMGFCDDMDFLSAPIVEGDAVAPPADPEVVVEDDYSDEDIDLDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPDSCPPLSSGGGSGSMVINDCSEYDVEGAEEEPNFDVQDRKPDNHSSFNLGMERIRERVPLRQPPYTIKGEVATNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYRTSSEFSGSNFHVNEVKPVIFPQSFAPPKPAPPPVSSVPSSFDLSSLGVPEDGQKLISDLMSIYDTNIQGNKNNVNSGNGAITENQNLSQLKIQSQQDEYFRNQGIMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNHHHHHHNNNNNNFHLMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYQ 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 61316748 61320408 + Tan0006541.1 Tan09g0930 763273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0930 628 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Tan09g0930 628 Coils Coil 48 68 - -
Tan09g0930 628 FunFam Ethylene insensitive 3-like 1 81 159 - -
Tan09g0930 628 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 3 611 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Tan09g0930 628 Pfam Ethylene insensitive 3, DNA-binding domain 49 296 IPR047091 GO:0003700(InterPro)
Tan09g0930 628 FunFam Ethylene insensitive 3-like 1 169 306 - -
Tan09g0930 628 Gene3D - 173 306 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Tan09g0930 628 Gene3D - 81 158 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0930 K14514 - - csv:101206055 1125.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1371 Tan-Chr1:13632238 Tan09g0930 Tan-Chr9:61316748 2.20E-26 dispersed
Tan09g0930 Tan-Chr9:61316748 Tan11g1054 Tan-Chr11:8290917 9.90E-205 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g0930 . 2 627 EIL Transcription Factor Family AT2G27050 58.6 2.4e-192 669.5
Tan11g1054 . 8 506 EIL Transcription Factor Family AT2G27050 62.2 1.6e-169 593.6
Tan11g1055 . 8 506 EIL Transcription Factor Family AT2G27050 62.2 1.6e-169 593.6
Tan11g1056 . 8 506 EIL Transcription Factor Family AT2G27050 62.2 1.6e-169 593.6
Tan09g0869 . 66 354 EIL Transcription Factor Family AT2G27050 59.3 6.2e-92 335.9
Tan09g0870 . 66 354 EIL Transcription Factor Family AT2G27050 59.3 6.2e-92 335.9
Tan09g0871 . 66 354 EIL Transcription Factor Family AT2G27050 59.3 6.2e-92 335.9
Tan09g0869 . 70 327 EIL Transcription Factor Family AT5G21120 51.5 2.6e-73 273.9
Tan09g0870 . 70 327 EIL Transcription Factor Family AT5G21120 51.5 2.6e-73 273.9
Tan09g0871 . 70 327 EIL Transcription Factor Family AT5G21120 51.5 2.6e-73 273.9
Tan09g0869 . 58 577 EIL Transcription Factor Family AT1G73730 54.5 3.1e-141 499.6
Tan09g0870 . 58 577 EIL Transcription Factor Family AT1G73730 54.5 3.1e-141 499.6
Tan09g0871 . 58 577 EIL Transcription Factor Family AT1G73730 54.5 3.1e-141 499.6
Tan09g0930 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 3.0e-104 376.7
Tan11g1054 . 40 335 EIL Transcription Factor Family AT1G73730 62.3 1.1e-103 374.8
Tan11g1055 . 40 335 EIL Transcription Factor Family AT1G73730 62.3 1.1e-103 374.8
Tan11g1056 . 40 335 EIL Transcription Factor Family AT1G73730 62.3 1.1e-103 374.8
Tan09g0930 . 3 627 EIL Transcription Factor Family AT3G20770 62.0 6.0e-210 728.0
Tan11g1054 . 7 504 EIL Transcription Factor Family AT3G20770 62.9 3.6e-170 595.9
Tan11g1055 . 7 504 EIL Transcription Factor Family AT3G20770 62.9 3.6e-170 595.9
Tan11g1056 . 7 504 EIL Transcription Factor Family AT3G20770 62.9 3.6e-170 595.9
Tan09g0869 . 66 292 EIL Transcription Factor Family AT3G20770 71.6 6.0e-93 339.3
Tan09g0870 . 66 292 EIL Transcription Factor Family AT3G20770 71.6 6.0e-93 339.3
Tan09g0871 . 66 292 EIL Transcription Factor Family AT3G20770 71.6 6.0e-93 339.3
Tan09g0869 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.2e-70 264.2
Tan09g0870 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.2e-70 264.2
Tan09g0871 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.2e-70 264.2
Tan09g0869 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
Tan09g0870 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
Tan09g0871 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28312 PF04873 EIN3 2.50E-129 No_clan Tan TF