Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan09g0960 | ATGGGTGATCTCGAAACTCGAAGAATTAGAAACATATGTATATTAGCACACGTAGACCATGGCAAAACGACGCTTGCCGACCATCTTATCGCCTCCTCCGGGGGCGGTTTGATCCACCCGAAGATGGCGGGGCGCCTTCGTTTCATGGACTATCTTGATGAGGAACAAAGGCGGGCAATTACTATGAAAAGCTCCTCGATTGGTCTACGGTACAGGGAATACTCTATAAACCTCATTGATTCGCCTGGCCATATGGATTTTTGTAGTGAAGTGTCGACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCTGTGGAGGGTGTGCACATTCAAACCCATGCCGTTTTGCGACAGGCTTGGATTGAGAAACTTACGCCGTGTTTGGTTCTTAATAAGATTGATAGATTGATATGTGAGTTGAAGTTGAGTCCTATGGAAGCATATACTCGTTTGTTGAGGATTGTTCATGAAGTTAATGGAATAATGAGTGCGTACAAGTCCGAGAAATATTTATCTGATGTCGATTCAATACTCGCAGGTTCTTCAGGTGAGGTGAATGATGAGAATCTCGAGTTTATTGAGGATGATGAGGAAGATACATTTCAACCCCAGAAAGGGAATGTGGTGTTTGTGTGTGCGTTAGATGGGTGGGGATTTGGCATTAATGAGTTTGCTGAGTTTTATGCTTCAAAGCTTGGGGCGAATGTATCTGCGTTGAAGAAGGCCTTGTGGGGTCCTCGATATTTTAATCCAAAGACCAAGATGATCGTTGGAAAAAAGGCCATGGCTGGAGGAAGTAAAGCTCGGCCTATGTTTGTTCAATTTGTGCTTGAAAGACTTTGGGAAGTTTATGGGGCTGGTTTAGAAACTGATGGGAATAAGGAGGTGCTTCAAAAGGTTAATAGCACATTTAATTTGAACATACCAGCTCGAGAACTTTCTAACAAGGATCCGAAGGTGGTTCTTCAAGCTATTATGAGTCGTTGGCTTCCTCTTTCAGATGCAATATTATCAATGGTCGTGAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCACGGTTGCTTCCAAAGAGGGATATCATTGATCTGGGAGTTGATGTCAATGTGCTAACTGAGGCAGATCTTGTAAAGAAATCCATTGAAGCTTGTGATTCGAGGCCTGACGCTCCATTTGTTGCCTTTGTGTCCAAGATGTTTGCAGTGCCAGTTAAAATGCTTCCACGGAGGGACAATCATGCTGAGACTACTAATATTTCATCTGATGATGGCGGAGATGGTGAATCAGATGAGTGTTTCCTTGCATTTGCAAGGATATTTAGTGGAGTTCTTCATTCTGGACAGAGAGTTTTCGTGCTTTCGGCTTTATATGACCCAACAAAAGGGGAATCAATGCAAAAGCACATTCAGGAGGCTGAGCTGCATTCATTTTATCTAATGATGGGCCAAGGCTTGAAACCAGTGACCTCAGTAAAAGCAGGAAACCTTGTGGCAATTCGCGGTCTTGGCCATCACATACTGAAAAGTGCAACTCTTTCATCCACAAGAAATTGTTGGCCTTTCTCAAGTATGGCATTCCAGGTTGCGCCAACTCTTAGGGTTGCGCTTGAGCCATCTGATCCTGGAGATATAGGTGCATTATTGAAAGGCTTAAGACTTTTAAATCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCAGCTAGGGGAGAACATGTACTTGCTGCAGCAGGAGAAGTTCATCTTGAGAGATGCATAAAGGATTTGAAGGAGAGGTTTGCCAGGGTAAGCTTGGAGGTCTCTCCGCCTCTTGTATCATATAAAGAGACAATTGAAGGAGAGGCATCTAGTGTGTCAGATTATTTTAAAGTGTTATCTGAAAGCACAGAGAGTGTTGTTAAGAAAACCCCAAATGGTAGATGTGTTGTCAGAGTGCAGGTACTGAAACTTCCACTTGCTCTAGCTAAAGCACTTGATGAAAATTCTGATGTTCTGGGAGATATTATTGGTGTCAAGTTGGGGCAAAGCTATAAAAACTTGGAAACAAAGAGATCAAGTTTGAGGGAAAATGAGAATCCAGCAGAATCATTAAAGAAACTCATAGCAGATGCAGTGTGTAGCAATATATCTTCAAAGGATGACAAACATAACACACAGTGGTCAAAGCTTCTTAGGCGAATTTGGGCACTTGGACCACAGCAGATAGGTCCTAACATTCTGATCAACCCAGATCCTAAAGTAAAGGATTCAGATTGCTCTGTTCTTATTCGGGGTTCGCCTCATGCATCACAGAGATTGGGTTTTGTGGACGATTCTTCAAATGGTGACTTGGATGCTGAAACATCTTTGGTAGGTGATATTTCTTCTGTAGCTTCACCAGAAGGAGTTCAGTCACTAAGCATAGAAGCAGCATCTCTCGAGAACAGTGTTCTGTCTGGGTTTCAGCTTGCTACATCAGCTGGGCCCTTATGTGATGAACCAATGTGGGGGTTGGCATTTATTGTTGAGGCCTCTATTTCTTCATTGCCTGTGAATTCAGATGAATCTGAAACTCCTTTTCAACCAGAGAACAATGCTATCTTTTCTGGACAAGTTATGGCAGCTGTAAAGGATGCCTGTAGAGCAGCTGTACTTCAGAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAATTGAACACTCCCACTGAGTATTTGGGTCCAATGTATGCTGTACTTGCTCGAAGGCGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACTGTGCATGCATACGTGCCAGTTTCAGAAAGCTTTGGTTTTGCAGATGAGTTAAGGAGGTGGACTTCTGGAGCAGCAAGTGCTCTTCTTGTACTTAGCCATTGGGAAGAACTATGTGAAGATCCATTTTTTGTGCCAAAGACAGAAGAAGAAATTGAAGAGTTTGGAGATGGATCTAGCATGCTTCCCAACACAGCAAGAAAGCTCATTGATACTGTTAGACGGCGTAAGGGTCTTCCAGTGGAAGAAAAAGTTGTGCAGTATGCAACAAAGCAGAGGACTCTGGCTAGAAAAGTATAG | 3093 | 43.13 | MGDLETRRIRNICILAHVDHGKTTLADHLIASSGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYREYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLSDVDSILAGSSGEVNDENLEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAEFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWEVYGAGLETDGNKEVLQKVNSTFNLNIPARELSNKDPKVVLQAIMSRWLPLSDAILSMVVNCMPDPIAAQSFRISRLLPKRDIIDLGVDVNVLTEADLVKKSIEACDSRPDAPFVAFVSKMFAVPVKMLPRRDNHAETTNISSDDGGDGESDECFLAFARIFSGVLHSGQRVFVLSALYDPTKGESMQKHIQEAELHSFYLMMGQGLKPVTSVKAGNLVAIRGLGHHILKSATLSSTRNCWPFSSMAFQVAPTLRVALEPSDPGDIGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKERFARVSLEVSPPLVSYKETIEGEASSVSDYFKVLSESTESVVKKTPNGRCVVRVQVLKLPLALAKALDENSDVLGDIIGVKLGQSYKNLETKRSSLRENENPAESLKKLIADAVCSNISSKDDKHNTQWSKLLRRIWALGPQQIGPNILINPDPKVKDSDCSVLIRGSPHASQRLGFVDDSSNGDLDAETSLVGDISSVASPEGVQSLSIEAASLENSVLSGFQLATSAGPLCDEPMWGLAFIVEASISSLPVNSDESETPFQPENNAIFSGQVMAAVKDACRAAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFVPKTEEEIEEFGDGSSMLPNTARKLIDTVRRRKGLPVEEKVVQYATKQRTLARKV | 1030 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 61613077 | 61617095 | - | Tan0005514.2 | Tan09g0960 | 763303 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan09g0960 | 1030 | FunFam | Translation elongation factor 2 | 535 | 611 | - | - | |
| Tan09g0960 | 1030 | Gene3D | - | 631 | 885 | IPR014721 | - | |
| Tan09g0960 | 1030 | FunFam | Elongation factor like GTPase 1 | 224 | 333 | - | - | |
| Tan09g0960 | 1030 | Gene3D | Yeast translation eEF2 (G' domain) | 224 | 333 | - | - | |
| Tan09g0960 | 1030 | SUPERFAMILY | EF-G C-terminal domain-like | 534 | 608 | IPR035647 | - | |
| Tan09g0960 | 1030 | PRINTS | GTP-binding elongation factor signature | 129 | 138 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan09g0960 | 1030 | PRINTS | GTP-binding elongation factor signature | 11 | 24 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan09g0960 | 1030 | PRINTS | GTP-binding elongation factor signature | 77 | 87 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan09g0960 | 1030 | PRINTS | GTP-binding elongation factor signature | 93 | 104 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan09g0960 | 1030 | PRINTS | GTP-binding elongation factor signature | 57 | 65 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan09g0960 | 1030 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 6 | 1027 | - | GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0042256(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER) | |
| Tan09g0960 | 1030 | Gene3D | - | 3 | 210 | IPR027417 | - | |
| Tan09g0960 | 1030 | SUPERFAMILY | Translation proteins | 388 | 530 | IPR009000 | - | |
| Tan09g0960 | 1030 | CDD | EF2 | 10 | 232 | - | - | |
| Tan09g0960 | 1030 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 7 | 239 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan09g0960 | 1030 | CDD | eEF2_snRNP_like_C | 891 | 969 | - | - | |
| Tan09g0960 | 1030 | Pfam | Elongation factor Tu GTP binding domain | 8 | 223 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tan09g0960 | 1030 | FunFam | Elongation factor 2-like protein | 2 | 212 | - | - | |
| Tan09g0960 | 1030 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 6 | 348 | IPR027417 | - | |
| Tan09g0960 | 1030 | Gene3D | Translation factors | 350 | 533 | - | - | |
| Tan09g0960 | 1030 | NCBIfam | small GTP-binding protein domain | 9 | 138 | IPR005225 | GO:0005525(InterPro) | |
| Tan09g0960 | 1030 | FunFam | Elongation factor like GTPase 1 | 887 | 1022 | - | - | |
| Tan09g0960 | 1030 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 610 | 890 | IPR020568 | - | |
| Tan09g0960 | 1030 | CDD | aeEF2_snRNP_like_IV | 607 | 895 | - | - | |
| Tan09g0960 | 1030 | Gene3D | - | 887 | 1023 | - | - | |
| Tan09g0960 | 1030 | CDD | EF2_II | 397 | 521 | - | - | |
| Tan09g0960 | 1030 | CDD | EF2_snRNP_III | 536 | 607 | - | - | |
| Tan09g0960 | 1030 | SUPERFAMILY | EF-G C-terminal domain-like | 891 | 990 | IPR035647 | - | |
| Tan09g0960 | 1030 | Pfam | Elongation factor G C-terminus | 888 | 972 | IPR000640 | - | |
| Tan09g0960 | 1030 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 536 | 611 | - | - | |
| Tan09g0960 | 1030 | SMART | EFG_C_a | 888 | 977 | IPR000640 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan09g0960 | Tan-Chr9:61613077 | Tan11g0530 | Tan-Chr11:4590785 | 2.70E-18 | dispersed | |
| Tan09g0959 | Tan-Chr9:61613077 | Tan09g0960 | Tan-Chr9:61613077 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan09g0960 | K14536 | - | csv:101220903 | 1862.04 |