Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g0960 ATGGGTGATCTCGAAACTCGAAGAATTAGAAACATATGTATATTAGCACACGTAGACCATGGCAAAACGACGCTTGCCGACCATCTTATCGCCTCCTCCGGGGGCGGTTTGATCCACCCGAAGATGGCGGGGCGCCTTCGTTTCATGGACTATCTTGATGAGGAACAAAGGCGGGCAATTACTATGAAAAGCTCCTCGATTGGTCTACGGTACAGGGAATACTCTATAAACCTCATTGATTCGCCTGGCCATATGGATTTTTGTAGTGAAGTGTCGACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCTGTGGAGGGTGTGCACATTCAAACCCATGCCGTTTTGCGACAGGCTTGGATTGAGAAACTTACGCCGTGTTTGGTTCTTAATAAGATTGATAGATTGATATGTGAGTTGAAGTTGAGTCCTATGGAAGCATATACTCGTTTGTTGAGGATTGTTCATGAAGTTAATGGAATAATGAGTGCGTACAAGTCCGAGAAATATTTATCTGATGTCGATTCAATACTCGCAGGTTCTTCAGGTGAGGTGAATGATGAGAATCTCGAGTTTATTGAGGATGATGAGGAAGATACATTTCAACCCCAGAAAGGGAATGTGGTGTTTGTGTGTGCGTTAGATGGGTGGGGATTTGGCATTAATGAGTTTGCTGAGTTTTATGCTTCAAAGCTTGGGGCGAATGTATCTGCGTTGAAGAAGGCCTTGTGGGGTCCTCGATATTTTAATCCAAAGACCAAGATGATCGTTGGAAAAAAGGCCATGGCTGGAGGAAGTAAAGCTCGGCCTATGTTTGTTCAATTTGTGCTTGAAAGACTTTGGGAAGTTTATGGGGCTGGTTTAGAAACTGATGGGAATAAGGAGGTGCTTCAAAAGGTTAATAGCACATTTAATTTGAACATACCAGCTCGAGAACTTTCTAACAAGGATCCGAAGGTGGTTCTTCAAGCTATTATGAGTCGTTGGCTTCCTCTTTCAGATGCAATATTATCAATGGTCGTGAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCACGGTTGCTTCCAAAGAGGGATATCATTGATCTGGGAGTTGATGTCAATGTGCTAACTGAGGCAGATCTTGTAAAGAAATCCATTGAAGCTTGTGATTCGAGGCCTGACGCTCCATTTGTTGCCTTTGTGTCCAAGATGTTTGCAGTGCCAGTTAAAATGCTTCCACGGAGGGACAATCATGCTGAGACTACTAATATTTCATCTGATGATGGCGGAGATGGTGAATCAGATGAGTGTTTCCTTGCATTTGCAAGGATATTTAGTGGAGTTCTTCATTCTGGACAGAGAGTTTTCGTGCTTTCGGCTTTATATGACCCAACAAAAGGGGAATCAATGCAAAAGCACATTCAGGAGGCTGAGCTGCATTCATTTTATCTAATGATGGGCCAAGGCTTGAAACCAGTGACCTCAGTAAAAGCAGGAAACCTTGTGGCAATTCGCGGTCTTGGCCATCACATACTGAAAAGTGCAACTCTTTCATCCACAAGAAATTGTTGGCCTTTCTCAAGTATGGCATTCCAGGTTGCGCCAACTCTTAGGGTTGCGCTTGAGCCATCTGATCCTGGAGATATAGGTGCATTATTGAAAGGCTTAAGACTTTTAAATCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCAGCTAGGGGAGAACATGTACTTGCTGCAGCAGGAGAAGTTCATCTTGAGAGATGCATAAAGGATTTGAAGGAGAGGTTTGCCAGGGTAAGCTTGGAGGTCTCTCCGCCTCTTGTATCATATAAAGAGACAATTGAAGGAGAGGCATCTAGTGTGTCAGATTATTTTAAAGTGTTATCTGAAAGCACAGAGAGTGTTGTTAAGAAAACCCCAAATGGTAGATGTGTTGTCAGAGTGCAGGTACTGAAACTTCCACTTGCTCTAGCTAAAGCACTTGATGAAAATTCTGATGTTCTGGGAGATATTATTGGTGTCAAGTTGGGGCAAAGCTATAAAAACTTGGAAACAAAGAGATCAAGTTTGAGGGAAAATGAGAATCCAGCAGAATCATTAAAGAAACTCATAGCAGATGCAGTGTGTAGCAATATATCTTCAAAGGATGACAAACATAACACACAGTGGTCAAAGCTTCTTAGGCGAATTTGGGCACTTGGACCACAGCAGATAGGTCCTAACATTCTGATCAACCCAGATCCTAAAGTAAAGGATTCAGATTGCTCTGTTCTTATTCGGGGTTCGCCTCATGCATCACAGAGATTGGGTTTTGTGGACGATTCTTCAAATGGTGACTTGGATGCTGAAACATCTTTGGTAGGTGATATTTCTTCTGTAGCTTCACCAGAAGGAGTTCAGTCACTAAGCATAGAAGCAGCATCTCTCGAGAACAGTGTTCTGTCTGGGTTTCAGCTTGCTACATCAGCTGGGCCCTTATGTGATGAACCAATGTGGGGGTTGGCATTTATTGTTGAGGCCTCTATTTCTTCATTGCCTGTGAATTCAGATGAATCTGAAACTCCTTTTCAACCAGAGAACAATGCTATCTTTTCTGGACAAGTTATGGCAGCTGTAAAGGATGCCTGTAGAGCAGCTGTACTTCAGAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAATTGAACACTCCCACTGAGTATTTGGGTCCAATGTATGCTGTACTTGCTCGAAGGCGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACTGTGCATGCATACGTGCCAGTTTCAGAAAGCTTTGGTTTTGCAGATGAGTTAAGGAGGTGGACTTCTGGAGCAGCAAGTGCTCTTCTTGTACTTAGCCATTGGGAAGAACTATGTGAAGATCCATTTTTTGTGCCAAAGACAGAAGAAGAAATTGAAGAGTTTGGAGATGGATCTAGCATGCTTCCCAACACAGCAAGAAAGCTCATTGATACTGTTAGACGGCGTAAGGGTCTTCCAGTGGAAGAAAAAGTTGTGCAGTATGCAACAAAGCAGAGGACTCTGGCTAGAAAAGTATAG 3093 43.13 MGDLETRRIRNICILAHVDHGKTTLADHLIASSGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYREYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLSDVDSILAGSSGEVNDENLEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAEFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWEVYGAGLETDGNKEVLQKVNSTFNLNIPARELSNKDPKVVLQAIMSRWLPLSDAILSMVVNCMPDPIAAQSFRISRLLPKRDIIDLGVDVNVLTEADLVKKSIEACDSRPDAPFVAFVSKMFAVPVKMLPRRDNHAETTNISSDDGGDGESDECFLAFARIFSGVLHSGQRVFVLSALYDPTKGESMQKHIQEAELHSFYLMMGQGLKPVTSVKAGNLVAIRGLGHHILKSATLSSTRNCWPFSSMAFQVAPTLRVALEPSDPGDIGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKERFARVSLEVSPPLVSYKETIEGEASSVSDYFKVLSESTESVVKKTPNGRCVVRVQVLKLPLALAKALDENSDVLGDIIGVKLGQSYKNLETKRSSLRENENPAESLKKLIADAVCSNISSKDDKHNTQWSKLLRRIWALGPQQIGPNILINPDPKVKDSDCSVLIRGSPHASQRLGFVDDSSNGDLDAETSLVGDISSVASPEGVQSLSIEAASLENSVLSGFQLATSAGPLCDEPMWGLAFIVEASISSLPVNSDESETPFQPENNAIFSGQVMAAVKDACRAAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFVPKTEEEIEEFGDGSSMLPNTARKLIDTVRRRKGLPVEEKVVQYATKQRTLARKV 1030
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 61613077 61617095 - Tan0005514.2 Tan09g0960 763303
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan09g0960 1030 FunFam Translation elongation factor 2 535 611 - -
Tan09g0960 1030 Gene3D - 631 885 IPR014721 -
Tan09g0960 1030 FunFam Elongation factor like GTPase 1 224 333 - -
Tan09g0960 1030 Gene3D Yeast translation eEF2 (G' domain) 224 333 - -
Tan09g0960 1030 SUPERFAMILY EF-G C-terminal domain-like 534 608 IPR035647 -
Tan09g0960 1030 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan09g0960 1030 PRINTS GTP-binding elongation factor signature 11 24 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan09g0960 1030 PRINTS GTP-binding elongation factor signature 77 87 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan09g0960 1030 PRINTS GTP-binding elongation factor signature 93 104 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan09g0960 1030 PRINTS GTP-binding elongation factor signature 57 65 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan09g0960 1030 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 6 1027 - GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0042256(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Tan09g0960 1030 Gene3D - 3 210 IPR027417 -
Tan09g0960 1030 SUPERFAMILY Translation proteins 388 530 IPR009000 -
Tan09g0960 1030 CDD EF2 10 232 - -
Tan09g0960 1030 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 7 239 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan09g0960 1030 CDD eEF2_snRNP_like_C 891 969 - -
Tan09g0960 1030 Pfam Elongation factor Tu GTP binding domain 8 223 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Tan09g0960 1030 FunFam Elongation factor 2-like protein 2 212 - -
Tan09g0960 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 348 IPR027417 -
Tan09g0960 1030 Gene3D Translation factors 350 533 - -
Tan09g0960 1030 NCBIfam small GTP-binding protein domain 9 138 IPR005225 GO:0005525(InterPro)
Tan09g0960 1030 FunFam Elongation factor like GTPase 1 887 1022 - -
Tan09g0960 1030 SUPERFAMILY Ribosomal protein S5 domain 2-like 610 890 IPR020568 -
Tan09g0960 1030 CDD aeEF2_snRNP_like_IV 607 895 - -
Tan09g0960 1030 Gene3D - 887 1023 - -
Tan09g0960 1030 CDD EF2_II 397 521 - -
Tan09g0960 1030 CDD EF2_snRNP_III 536 607 - -
Tan09g0960 1030 SUPERFAMILY EF-G C-terminal domain-like 891 990 IPR035647 -
Tan09g0960 1030 Pfam Elongation factor G C-terminus 888 972 IPR000640 -
Tan09g0960 1030 Gene3D Elongation Factor G (Translational Gtpase), domain 3 536 611 - -
Tan09g0960 1030 SMART EFG_C_a 888 977 IPR000640 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0960 Tan-Chr9:61613077 Tan11g0530 Tan-Chr11:4590785 2.70E-18 dispersed
Tan09g0959 Tan-Chr9:61613077 Tan09g0960 Tan-Chr9:61613077 0.00E+00 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g0960 K14536 - csv:101220903 1862.04