Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan09g1060 | ATGGCTTCGGATTCGAACAATGGCGGTGAAGTCGGAGTGGATAACTCTCTCCAATCCATCTGTTACAAGCGCGGATCCTTGCGGCTGCTCGATCAGAGGAAGCTCCCTTTGGAAACTGTTTACCTGGACATCAAGGATGCAACAGATGGATGGCATGCAATAAGGGATATGGTCGTACGTGGGGCACCTGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGTAGAAGTGTACAACTCGAACACTTTTAATGGGATGTCCAACGATGCAGCTTCGTTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCTGTTAATCTTAGCGATGCTGCTATAAAACTTAAAGACATTGTATCTGGGGCCGCTGCTATTTCTTCTGATGCAAAAAATGTCTTCCAAGCATATATAGAGGCTGCTGAAGCAATGCTGGAGGAAGACGTTGCTTCAAATAAAGCCATTGGGTCCTATGGGGCAACTTATATCCGTGATCAACAAAAATCATTGGAAAAGTTTTCCGTGCTAACGCATTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTAATCCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACTGAAACACGACCCTTCAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCACGAAAAGATACCTTCTACCCTGATAGCAGATTCTGCTGCTGCTGCCTTGATGAAATTTGGAAGGGTTAATGCTGTTGTAGTTGGGGCCGATCGCGTAGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGCCTTGCGTTGTGTGCAATGCATCACAAGATTCCATTCTTTGTGGCTGCACCATTGACTTCCATAGACCTGTCCCTTTCTTCTGGAGAAGAAATCGTTATTGAGGAAAGGTCTGCCAAAGAGTTGTTGAACACACGTGGAGGACTAGGCGAGCAAGTCGCTGCATCTGGCATCGCTGTCTGGAACCCTGCTTTTGATGTCACTCCTGCTCATCTGATTTCTGGAATCATAACAGAAAAGGGAGTCATCACGAAGTCGGGTTCTGAATCTTTCAACATAAAGGAGTTTGTTCAAAAGACAGCCGGTGCGTAG | 1140 | 46.67 | MASDSNNGGEVGVDNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAVEVYNSNTFNGMSNDAASFIAEKLDYLVSSRPTAVNLSDAAIKLKDIVSGAAAISSDAKNVFQAYIEAAEAMLEEDVASNKAIGSYGATYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHKIPFFVAAPLTSIDLSLSSGEEIVIEERSAKELLNTRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKSGSESFNIKEFVQKTAGA | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 62826512 | 62830320 | + | Tan0011725.1 | Tan09g1060 | 763403 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan09g1060 | 379 | Gene3D | - | 208 | 373 | IPR042529 | - | |
Tan09g1060 | 379 | FunFam | Methylthioribose-1-phosphate isomerase | 15 | 207 | - | - | |
Tan09g1060 | 379 | Pfam | Initiation factor 2 subunit family | 59 | 360 | IPR000649 | GO:0044237(InterPro) | |
Tan09g1060 | 379 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 16 | 363 | IPR037171 | - | |
Tan09g1060 | 379 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 44 | 361 | IPR011559 | GO:0044249(InterPro) | |
Tan09g1060 | 379 | Hamap | Putative methylthioribose-1-phosphate isomerase [mtnA]. | 17 | 370 | IPR005251 | - | |
Tan09g1060 | 379 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 15 | 376 | - | GO:0019509(PANTHER)|GO:0046523(PANTHER) | |
Tan09g1060 | 379 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 18 | 361 | IPR005251 | - | |
Tan09g1060 | 379 | FunFam | Methylthioribose-1-phosphate isomerase | 173 | 370 | - | - | |
Tan09g1060 | 379 | Gene3D | - | 15 | 207 | IPR027363 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan09g1060 | Tan-Chr9:62826512 | Tan09g1061 | Tan-Chr9:62826512 | 9.90E-208 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan09g1060 | K08963 | - | csv:101210526 | 670.618 |