Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1060 ATGGCTTCGGATTCGAACAATGGCGGTGAAGTCGGAGTGGATAACTCTCTCCAATCCATCTGTTACAAGCGCGGATCCTTGCGGCTGCTCGATCAGAGGAAGCTCCCTTTGGAAACTGTTTACCTGGACATCAAGGATGCAACAGATGGATGGCATGCAATAAGGGATATGGTCGTACGTGGGGCACCTGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGTAGAAGTGTACAACTCGAACACTTTTAATGGGATGTCCAACGATGCAGCTTCGTTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCTGTTAATCTTAGCGATGCTGCTATAAAACTTAAAGACATTGTATCTGGGGCCGCTGCTATTTCTTCTGATGCAAAAAATGTCTTCCAAGCATATATAGAGGCTGCTGAAGCAATGCTGGAGGAAGACGTTGCTTCAAATAAAGCCATTGGGTCCTATGGGGCAACTTATATCCGTGATCAACAAAAATCATTGGAAAAGTTTTCCGTGCTAACGCATTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTAATCCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACTGAAACACGACCCTTCAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCACGAAAAGATACCTTCTACCCTGATAGCAGATTCTGCTGCTGCTGCCTTGATGAAATTTGGAAGGGTTAATGCTGTTGTAGTTGGGGCCGATCGCGTAGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGCCTTGCGTTGTGTGCAATGCATCACAAGATTCCATTCTTTGTGGCTGCACCATTGACTTCCATAGACCTGTCCCTTTCTTCTGGAGAAGAAATCGTTATTGAGGAAAGGTCTGCCAAAGAGTTGTTGAACACACGTGGAGGACTAGGCGAGCAAGTCGCTGCATCTGGCATCGCTGTCTGGAACCCTGCTTTTGATGTCACTCCTGCTCATCTGATTTCTGGAATCATAACAGAAAAGGGAGTCATCACGAAGTCGGGTTCTGAATCTTTCAACATAAAGGAGTTTGTTCAAAAGACAGCCGGTGCGTAG 1140 46.67 MASDSNNGGEVGVDNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAVEVYNSNTFNGMSNDAASFIAEKLDYLVSSRPTAVNLSDAAIKLKDIVSGAAAISSDAKNVFQAYIEAAEAMLEEDVASNKAIGSYGATYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHKIPFFVAAPLTSIDLSLSSGEEIVIEERSAKELLNTRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKSGSESFNIKEFVQKTAGA 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 62826512 62830320 + Tan0011725.1 Tan09g1060 763403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1060 379 Gene3D - 208 373 IPR042529 -
Tan09g1060 379 FunFam Methylthioribose-1-phosphate isomerase 15 207 - -
Tan09g1060 379 Pfam Initiation factor 2 subunit family 59 360 IPR000649 GO:0044237(InterPro)
Tan09g1060 379 SUPERFAMILY NagB/RpiA/CoA transferase-like 16 363 IPR037171 -
Tan09g1060 379 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 44 361 IPR011559 GO:0044249(InterPro)
Tan09g1060 379 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 17 370 IPR005251 -
Tan09g1060 379 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 376 - GO:0019509(PANTHER)|GO:0046523(PANTHER)
Tan09g1060 379 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 18 361 IPR005251 -
Tan09g1060 379 FunFam Methylthioribose-1-phosphate isomerase 173 370 - -
Tan09g1060 379 Gene3D - 15 207 IPR027363 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1060 Tan-Chr9:62826512 Tan09g1061 Tan-Chr9:62826512 9.90E-208 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1060 K08963 - csv:101210526 670.618