Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1089 ATGAGCACCAGAAGTATGTTTCCCTTCACATCAACTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGATCTTCTCTTCAGTATTAAAAGAAGTACCTTGGACTCTTCTTTCACCTCTAAGCTCTTCCCACACCACCCTCAACATGTTGGGTGGAACTATTTGCAGATGAGTTTAGGGAGGAAGATAGACCCAGAACCAGGGAGGTGCAGAAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAGGCATATCCAGATTCGAAATACTGTGAGAGGCACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAATGATATTAACCACCTCTCAAATCCATCATTTTCTTCCTTAACCAACAATTCGTCCTTACTCTCCTATCGGCCCTTCCCCGCTCATCAAATATCTTCAACTTCTAATGGGAATGGCATATCAACTCAAGACACTAATACCCTCTTGCTTCTGGAATCTGGTTCCCACTCGGACAGAAACCCAGATTACAGAAGTAGGTACACTTATGGGCTAAAAGAGGAAGTGGATGAGCATGTTTTCTTCTCGCAAGAACCATCTGAAACTACTGCGAGAGCTGATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATATCCAAAACAGAACAACTGCTCTTCTTTGCAGAGTGATCAGTCTTGCTATCAGCTTCATCAGAGCCTCACAGACCCTTTGAAGCAACAAAAGAGAGACGAATCACAGAAGACAGTTTATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGATTTCGAGGATAAATCATCAAATCCTGGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACCGCTTCTAACGACTTCCCCATTTTCAGATCCAAAAACCCATAA 975 43.18 MSTRSMFPFTSTQWQELEHQALIFKYMVSGIPIPPDLLFSIKRSTLDSSFTSKLFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINHLSNPSFSSLTNNSSLLSYRPFPAHQISSTSNGNGISTQDTNTLLLLESGSHSDRNPDYRSRYTYGLKEEVDEHVFFSQEPSETTARADSLQLTPLTMSCSSLYPKQNNCSSLQSDQSCYQLHQSLTDPLKQQKRDESQKTVYRFFDEWPPKERGSWLDFEDKSSNPGSVSTTRLSISIPTASNDFPIFRSKNP 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 63239220 63241323 + Tan0000841.1 Tan09g1089 763432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1089 324 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan09g1089 324 Pfam WRC 77 118 IPR014977 -
Tan09g1089 324 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan09g1089 324 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Tan09g1089 324 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan09g1089 324 PANTHER GROWTH-REGULATING FACTOR 5 2 311 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1759 Tan-Chr8:69483338 Tan09g1089 Tan-Chr9:63239220 3.50E-28 dispersed
Tan09g1089 Tan-Chr9:63239220 Tan10g0326 Tan-Chr10:2720228 1.10E-24 dispersed
Tan05g1523 Tan-Chr5:31030836 Tan09g1089 Tan-Chr9:63239220 6.60E-54 transposed
Tan08g0018 Tan-Chr8:438945 Tan09g1089 Tan-Chr9:63239220 1.30E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28326 PF08879 WRC 1.10E-20 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1089 - - - 0.0