Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1099 ATGGCGGATAAGAAAGGAGTGGAACAAGTTGTTGTACCGATTTTGGATAGTGAAGGAATAGTTGAATCTAGTGAAGAACGCTCTGTTGCTTCTTTTCCTGATCTTGAGATTAACGACACTCAGAGTTTTAGATGCACAATTCCGCTATCCGTGGTTGAAACCTCTCCTTCACACGAGATTGTCAGAATGAGTCCCCTTAAACCTCCAAAAATTTCGATGCCAAAATCTTATCCTGCTTGTGCAAGTTTGGCAGAAGAAAAGGCTCAAGCAAAATCAACATCTGGTTCACTATTCTGTAGCTCTCCGAAGATAACCACTGTGACTAGTCCTAGAGATGCTTTGCAGTCGGCCCCGAGAACCCCTAAAGGTTCTGGAGGTGAGGAGGATGATAATGAAGAAGATTACAAAACTGCAGAACAGAAAGTGAAAGAAAGATCAAGGAAGAAGTCAAAAATTCCCATTTTAATTGAATTGGGCGCATTTTTGTGTATAACAGGGTGTTTAATTGCTAGTTTGACAATAGACAAGTTGCTAACTAAAGAGATCTGGGGATTAGGACTGTGGAGATGGTGTGTTCTGATATTAGTTATTTTCAGTGGCCGTTTATTTTCACAATGGTTTATCAAGTGTCTGGTTTTCTTGTTTGAAAGAAACTTTATATTTCAAGAAAAGGTTCTATATTTTATCTATGGGCTGAGGAAGAGTGTTATATTTTTTATTTGGCTGGGATTGATTCTTCTAGCGTGGGTTCTATTATTTAATCAAAGCAGTGATAGATCTAAGAAAGATAAGGAGATTCTGAATTATATTACACGAGCTCTTGGTGGTTCTATCATTGGAGCAACATTATGGTTGGTGAAAACTTTGTTGGTGAAGATAGTAGCTGCTTCTTTCCAATGCGCTAAATTCTTCGAACGAATTAAAGAATCATTTTTCCATAATTATATCCTGCAAACCCTATCACGACCTCCCCTGATGACGATGACTGAGAGGGTCAGGAGAGTGGCAAGCACAGGGCATTTGTGTTACTTCAAGTTTTTGAAGAAAGAAAGGGATGGTAAGAAAGAAGGGAAGAAAGGGGGGATTGATGTAGAGAAGCTCAGAAAGATGAAGCAAGAAGAAATTTCTGCTTGGACCATGAGTGGGCTAATCGATGATATAAGAAATTCAGGGCTGTCCACAATCTCTGATACAATAGAGAATTTTAACGAGGAAGAGGCTGAGCAAAAAGATAAGGAGATTAAAAATGAATGGGAAGCAAAGGCTGCAGCTAACCAAATTTTCAGGAATGTCGCGAAAGCTGGTAGCAAGTTTATTGAGGAAGAGGACCTCTTTCCTTTTATGCGTAAGGAGGTAGTTAATAATGTGCTGAAATTGTTTGAAGGAGCGGTCGAGAATCGGAGGATAAAGCGAAAAACGCTCAAAAATTGGCTGGTGAAGGTTTATCAGGAACGCAAGTCGCTAGCCCAATCTTTGAATGACACCAAGACTGCAATAGAGGAGCTAAACAGGCTTGCTTCTGCATTTGTACTGTTTGTGGCTATCATTGTATGGCTACTTGTGATGGGTTTCTTGACGATGAAAGTACTCGTCTTCATTTCGTCACAGCTTCTACTAGTGGCTTTCATGTTTGGTAACACTGCCAAAACTGTATTTGAAGCCATCATATTCGTATTTGTGATGCATCCATTTGATGTTGGGGATCGTTGTGTTGTAGATGGCGTGCAGATGATTGTTGAAGAAATGAACCTTTTAACCACAGTTTTCTTGAAATATGACAATGAGATGATCATCTATCCAAATTCTGTTCTAGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCCCCAAAATGATCGATTTGGTCGAATTTACTGTTGACTTCTCCACATCAATCAAAAGCATTGAAGATCTAAAAGCAGGAATAAAATCATACATAGCAAAGAATCCTAAGATCTGGAGTTCGAACCACAGTTTCTTGGTGAAAGATATCGAGAATGTCGACAAAATGAAAATGGCTTTATACGTGAATCACACCATGAACTTTCAGGAGTATACCCTGAAGAGCAATCGCAGATCGGAACTAGTCTTGGAGCTGAAGAGAATTTTTGAAAATCTTGGCATCAAGTATCACCTGCTACCTCAACAAGTTCAGCTCAACTATGGGAGTTCACCAGCTCTACCACCCTCGCGGAATTAA 2202 39.87 MADKKGVEQVVVPILDSEGIVESSEERSVASFPDLEINDTQSFRCTIPLSVVETSPSHEIVRMSPLKPPKISMPKSYPACASLAEEKAQAKSTSGSLFCSSPKITTVTSPRDALQSAPRTPKGSGGEEDDNEEDYKTAEQKVKERSRKKSKIPILIELGAFLCITGCLIASLTIDKLLTKEIWGLGLWRWCVLILVIFSGRLFSQWFIKCLVFLFERNFIFQEKVLYFIYGLRKSVIFFIWLGLILLAWVLLFNQSSDRSKKDKEILNYITRALGGSIIGATLWLVKTLLVKIVAASFQCAKFFERIKESFFHNYILQTLSRPPLMTMTERVRRVASTGHLCYFKFLKKERDGKKEGKKGGIDVEKLRKMKQEEISAWTMSGLIDDIRNSGLSTISDTIENFNEEEAEQKDKEIKNEWEAKAAANQIFRNVAKAGSKFIEEEDLFPFMRKEVVNNVLKLFEGAVENRRIKRKTLKNWLVKVYQERKSLAQSLNDTKTAIEELNRLASAFVLFVAIIVWLLVMGFLTMKVLVFISSQLLLVAFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNLLTTVFLKYDNEMIIYPNSVLATKPISNFYRSPPKMIDLVEFTVDFSTSIKSIEDLKAGIKSYIAKNPKIWSSNHSFLVKDIENVDKMKMALYVNHTMNFQEYTLKSNRRSELVLELKRIFENLGIKYHLLPQQVQLNYGSSPALPPSRN 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 63310623 63313481 - Tan0004158.1 Tan09g1099 763442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1099 733 PIRSF Memb_At2g17000 23 733 IPR016688 -
Tan09g1099 733 Gene3D - 563 612 IPR023408 -
Tan09g1099 733 Coils Coil 485 505 - -
Tan09g1099 733 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 73 721 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Tan09g1099 733 SUPERFAMILY Sm-like ribonucleoproteins 553 612 IPR010920 -
Tan09g1099 733 Pfam Mechanosensitive ion channel, beta-domain 556 612 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan09g1099 733 MobiDBLite consensus disorder prediction 108 142 - -
Tan09g1099 733 FunFam Predicted mechanosensitive ion channel 563 612 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1099 Tan-Chr9:63310623 Tan09g1101 Tan-Chr9:63325822 0.00E+00 dispersed
Tan09g1099 Tan-Chr9:63310623 Tan09g1100 Tan-Chr9:63325822 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1099 K22048 - csv:101209209 972.23