Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1102 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTACGTATTTTGGATGGTGAAGGAGCAGTTGATGGGAGTAAAGATTTCCCTAAAAGCTCTGTTGCTTCTTTTCCTGATTTTGAGCTAAAAGAAACTCGGAGTTTTAGATGCACAATTCCACAATCCGTGGTTGGGAGCTCTCCTTCACATGAGATTTCTAGAATGAGTCCCCTTAAACCTCCAAAAATTCCGGTTGAATCAGCAGTTCGGCGTCCATCATTGGCTCGTTCGTCGTTTTCAAAGTCGAAATCAAGGCTAGTAGAGCCGCCTTGTCCTGATGGTCTGAGTTTGGCAGAAGAAAAAACTCAAGCAAAATCAACGTCTGGTTCAGCATTTTATAGCTCTCCGAAGATGGACTCCCCAGCTAAGATAACCACTGCGACTAGTCCTAGAGAAGCTTTGAAGTCGGCCCCGATAACTCCTAAAACGCCATTGATTGGATCTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTATAGAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTGAAAAGGACCATTTTAATTGAATGGGTTGCATTTTTGTGCTTGACGGGGTGTTTGATTGCTAGCTTAACAGTAGAGAAGTTGGTGACTAAAGAGATCTGGGGATTAGGGATGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCTGTGGTCGTTTATTTTCACAATGGTTTATCAATATTCTGGTTTTCTTGATTGAAAGGAACTTTCTACTTAAAAGAAAGGTTCTATATTTTGTCTATGGGCTGAGGAAGAGTGTCATAATTTTTATTTGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGTAATGAGATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTTATTGGGGCAGCATTATGGCTGGTGAAAACTTTGCTGGTGAAGATACTAGCTGCTTCTTTTCAATGCGCTAGATTCTTCGATCGGATTCAAGAATCCATCTTCCATCAGTATATCCTCCGCACTCTATCAGGACCTCCACTGATGGAGATGGCTGAGAGGGTCGGGAGAGCGGCAAGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGCAAAAAGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAAATTTTCAGGAACGTCGCAAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAGTAAGGAGGAAGTTGATAATGTGCTGCCATTGTTTGAAGGAGCAGTTGAGACCGGGAAGATAAAACGAAAATCCCTGAAGAATTGGCTGGTGAATGTTTATGTCGAACGCAAGTCGCTCGCCCACTCATTGAATGACACCAAGACTGCAATAGAGGAGCTAAACAAGCTTGCATCTGCACTTGTATTGATCGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTGACGACGCAAGTACTCGTCTTCATTTCGTCACAGCTTCTGCTGGTGGTTTTCATGTTTGGTAACACTGCCAGAACCGTATTTGAAGCCATCATATTCGTATTTGTAATGCATCCATTTGATGTGGGGGATCGTTGTGTTGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTTGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGCGATTCGATTGAATTTTCTGTTGATTTTTCCACGTCAATTGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACATCGAAAGCAAACCGCAGTTCTGGCGCCCAAACCATAGTATCCTCGTGAAGGAGATCGAGAATGTCAACAAGATGAAAATGGGTCTATACGTCAATCACACCATAAACTTTCAGAACTATGGCGACAAGAGCAGTCGCAGATCGGAACTAGTCTTGGAGATGAAGAAAATTTTCGAAGATCTTGGCATCAAGTATCATCTGCTACCTCAAGAAGTTCAGCTCAACTATGTGAGTTCAGCAGCTCCTATGGTTCCACCCTCGAGGAGATGA 2310 41.82 MADKKGTEQVVLRILDGEGAVDGSKDFPKSSVASFPDFELKETRSFRCTIPQSVVGSSPSHEISRMSPLKPPKIPVESAVRRPSLARSSFSKSKSRLVEPPCPDGLSLAEEKTQAKSTSGSAFYSSPKMDSPAKITTATSPREALKSAPITPKTPLIGSTGSEEEDDEEVYRTAELKVKERSGKKLKRTILIEWVAFLCLTGCLIASLTVEKLVTKEIWGLGMWKWCVLVLVIFCGRLFSQWFINILVFLIERNFLLKRKVLYFVYGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAALWLVKTLLVKILAASFQCARFFDRIQESIFHQYILRTLSGPPLMEMAERVGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEVDNVLPLFEGAVETGKIKRKSLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASALVLIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIEFSVDFSTSIESIGALKARIKSYIESKPQFWRPNHSILVKEIENVNKMKMGLYVNHTINFQNYGDKSSRRSELVLEMKKIFEDLGIKYHLLPQEVQLNYVSSAAPMVPPSRR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 63336187 63339203 - Tan0010204.1 Tan09g1102 763445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1102 769 MobiDBLite consensus disorder prediction 52 134 - -
Tan09g1102 769 Gene3D - 598 647 IPR023408 -
Tan09g1102 769 MobiDBLite consensus disorder prediction 111 134 - -
Tan09g1102 769 PIRSF Memb_At2g17000 19 768 IPR016688 -
Tan09g1102 769 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Tan09g1102 769 FunFam Predicted mechanosensitive ion channel 598 647 - -
Tan09g1102 769 Pfam Mechanosensitive ion channel, beta-domain 591 647 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan09g1102 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 67 759 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1102 K22048 - - csv:101209209 1312.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3463 Tan-Chr1:99949559 Tan09g1102 Tan-Chr9:63336187 5.10E-184 dispersed
Tan05g1092 Tan-Chr5:9643270 Tan09g1102 Tan-Chr9:63336187 5.90E-153 dispersed
Tan05g1093 Tan-Chr5:9643270 Tan09g1102 Tan-Chr9:63336187 3.40E-73 dispersed
Tan06g2243 Tan-Chr6:73248345 Tan09g1102 Tan-Chr9:63336187 4.40E-177 dispersed
Tan09g1100 Tan-Chr9:63325822 Tan09g1102 Tan-Chr9:63336187 1.20E-299 dispersed
Tan09g1101 Tan-Chr9:63325822 Tan09g1102 Tan-Chr9:63336187 3.90E-296 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan11g2174 . 1 503 Mechanosensitive Ion Channel Family AT4G00290 50.6 4.7e-133 472.2
Tan01g1484 . 58 725 Mechanosensitive Ion Channel Family AT5G10490 58.4 1.8e-196 683.3
Tan02g2481 . 10 705 Mechanosensitive Ion Channel Family AT5G10490 55.8 4.9e-194 675.2
Tan02g2481 . 10 685 Mechanosensitive Ion Channel Family AT1G58200 57.8 7.5e-198 688.0
Tan01g1484 . 49 695 Mechanosensitive Ion Channel Family AT1G58200 53.0 5.7e-174 608.6
Tan05g1092 . 45 934 Mechanosensitive Ion Channel Family AT1G53470 56.7 3.3e-270 928.7
Tan02g0642 . 83 943 Mechanosensitive Ion Channel Family AT1G53470 50.8 4.2e-233 805.4
Tan05g1093 . 45 676 Mechanosensitive Ion Channel Family AT1G53470 51.9 8.0e-160 562.0
Tan05g1092 . 45 929 Mechanosensitive Ion Channel Family AT3G14810 53.8 2.8e-250 862.4
Tan05g1092 . 49 934 Mechanosensitive Ion Channel Family AT1G78610 59.9 2.4e-286 982.2
Tan02g0642 . 61 941 Mechanosensitive Ion Channel Family AT1G78610 56.8 6.8e-265 911.0
Tan05g1093 . 49 676 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.2e-173 607.8
Tan05g1092 . 224 930 Mechanosensitive Ion Channel Family AT2G17000 61.5 2.2e-239 826.2
Tan02g0642 . 271 944 Mechanosensitive Ion Channel Family AT2G17000 59.2 1.7e-220 763.5
Tan05g1093 . 224 676 Mechanosensitive Ion Channel Family AT2G17000 58.3 3.5e-136 483.4
Tan09g1102 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.6 3.3e-199 692.6
Tan01g3463 . 80 728 Mechanosensitive Ion Channel Family AT5G12080 55.8 3.5e-193 672.5
Tan09g1099 . 67 720 Mechanosensitive Ion Channel Family AT5G12080 51.1 3.1e-165 579.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47