Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1102 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTACGTATTTTGGATGGTGAAGGAGCAGTTGATGGGAGTAAAGATTTCCCTAAAAGCTCTGTTGCTTCTTTTCCTGATTTTGAGCTAAAAGAAACTCGGAGTTTTAGATGCACAATTCCACAATCCGTGGTTGGGAGCTCTCCTTCACATGAGATTTCTAGAATGAGTCCCCTTAAACCTCCAAAAATTCCGGTTGAATCAGCAGTTCGGCGTCCATCATTGGCTCGTTCGTCGTTTTCAAAGTCGAAATCAAGGCTAGTAGAGCCGCCTTGTCCTGATGGTCTGAGTTTGGCAGAAGAAAAAACTCAAGCAAAATCAACGTCTGGTTCAGCATTTTATAGCTCTCCGAAGATGGACTCCCCAGCTAAGATAACCACTGCGACTAGTCCTAGAGAAGCTTTGAAGTCGGCCCCGATAACTCCTAAAACGCCATTGATTGGATCTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTATAGAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTGAAAAGGACCATTTTAATTGAATGGGTTGCATTTTTGTGCTTGACGGGGTGTTTGATTGCTAGCTTAACAGTAGAGAAGTTGGTGACTAAAGAGATCTGGGGATTAGGGATGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCTGTGGTCGTTTATTTTCACAATGGTTTATCAATATTCTGGTTTTCTTGATTGAAAGGAACTTTCTACTTAAAAGAAAGGTTCTATATTTTGTCTATGGGCTGAGGAAGAGTGTCATAATTTTTATTTGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGTAATGAGATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTTATTGGGGCAGCATTATGGCTGGTGAAAACTTTGCTGGTGAAGATACTAGCTGCTTCTTTTCAATGCGCTAGATTCTTCGATCGGATTCAAGAATCCATCTTCCATCAGTATATCCTCCGCACTCTATCAGGACCTCCACTGATGGAGATGGCTGAGAGGGTCGGGAGAGCGGCAAGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGCAAAAAGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAAATTTTCAGGAACGTCGCAAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAGTAAGGAGGAAGTTGATAATGTGCTGCCATTGTTTGAAGGAGCAGTTGAGACCGGGAAGATAAAACGAAAATCCCTGAAGAATTGGCTGGTGAATGTTTATGTCGAACGCAAGTCGCTCGCCCACTCATTGAATGACACCAAGACTGCAATAGAGGAGCTAAACAAGCTTGCATCTGCACTTGTATTGATCGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTGACGACGCAAGTACTCGTCTTCATTTCGTCACAGCTTCTGCTGGTGGTTTTCATGTTTGGTAACACTGCCAGAACCGTATTTGAAGCCATCATATTCGTATTTGTAATGCATCCATTTGATGTGGGGGATCGTTGTGTTGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTTGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGCGATTCGATTGAATTTTCTGTTGATTTTTCCACGTCAATTGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACATCGAAAGCAAACCGCAGTTCTGGCGCCCAAACCATAGTATCCTCGTGAAGGAGATCGAGAATGTCAACAAGATGAAAATGGGTCTATACGTCAATCACACCATAAACTTTCAGAACTATGGCGACAAGAGCAGTCGCAGATCGGAACTAGTCTTGGAGATGAAGAAAATTTTCGAAGATCTTGGCATCAAGTATCATCTGCTACCTCAAGAAGTTCAGCTCAACTATGTGAGTTCAGCAGCTCCTATGGTTCCACCCTCGAGGAGATGA 2310 41.82 MADKKGTEQVVLRILDGEGAVDGSKDFPKSSVASFPDFELKETRSFRCTIPQSVVGSSPSHEISRMSPLKPPKIPVESAVRRPSLARSSFSKSKSRLVEPPCPDGLSLAEEKTQAKSTSGSAFYSSPKMDSPAKITTATSPREALKSAPITPKTPLIGSTGSEEEDDEEVYRTAELKVKERSGKKLKRTILIEWVAFLCLTGCLIASLTVEKLVTKEIWGLGMWKWCVLVLVIFCGRLFSQWFINILVFLIERNFLLKRKVLYFVYGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAALWLVKTLLVKILAASFQCARFFDRIQESIFHQYILRTLSGPPLMEMAERVGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEVDNVLPLFEGAVETGKIKRKSLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASALVLIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIEFSVDFSTSIESIGALKARIKSYIESKPQFWRPNHSILVKEIENVNKMKMGLYVNHTINFQNYGDKSSRRSELVLEMKKIFEDLGIKYHLLPQEVQLNYVSSAAPMVPPSRR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 63336187 63339203 - Tan0010204.1 Tan09g1102 763445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1102 769 MobiDBLite consensus disorder prediction 52 134 - -
Tan09g1102 769 Gene3D - 598 647 IPR023408 -
Tan09g1102 769 MobiDBLite consensus disorder prediction 111 134 - -
Tan09g1102 769 PIRSF Memb_At2g17000 19 768 IPR016688 -
Tan09g1102 769 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Tan09g1102 769 FunFam Predicted mechanosensitive ion channel 598 647 - -
Tan09g1102 769 Pfam Mechanosensitive ion channel, beta-domain 591 647 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan09g1102 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 67 759 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3463 Tan-Chr1:99949559 Tan09g1102 Tan-Chr9:63336187 5.10E-184 dispersed
Tan05g1092 Tan-Chr5:9643270 Tan09g1102 Tan-Chr9:63336187 5.90E-153 dispersed
Tan05g1093 Tan-Chr5:9643270 Tan09g1102 Tan-Chr9:63336187 3.40E-73 dispersed
Tan06g2243 Tan-Chr6:73248345 Tan09g1102 Tan-Chr9:63336187 4.40E-177 dispersed
Tan09g1100 Tan-Chr9:63325822 Tan09g1102 Tan-Chr9:63336187 1.20E-299 dispersed
Tan09g1101 Tan-Chr9:63325822 Tan09g1102 Tan-Chr9:63336187 3.90E-296 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1102 K22048 - csv:101209209 1312.75