Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1114 ATGAGGAAGGGAGGATTCAGCAACAACCTCAATCTCAAGCTCAATCTCCCTCAAGAAGACCAATCCATAGCCAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCTCCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCAGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGGACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAGGAATCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCACAGTGTCCCTATATTGTTGTCTGTTACCAATCGTTCTATGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGTGGATCTTTAGCTGATTTTTTGAAAAAGGTTAAAAAAATTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCTAATTTATTAGTAAACCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTCGTTGGCACGTACAACTATATGTCTCCCGAGAGAATTGTTGGAGAAAGATATGACAATAAAAGTGACATTTGGAGCTTGGGGCTGATAGTACTTGAGTGTGCAACCGGCAAATTCCCTTATTCTCCTCCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAACCTCCTTCTGCTCCAGCTGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTTTGCAAAACGACCCAAAGGATAGACCGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAGGATACGGATATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1068 41.67 MRKGGFSNNLNLKLNLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAALCKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLIVLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLQNDPKDRPSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 63452776 63457478 + Tan0021319.1 Tan09g1114 763457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1114 355 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Tan09g1114 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Tan09g1114 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Tan09g1114 355 FunFam Mitogen-activated protein kinase kinase 6 152 350 - -
Tan09g1114 355 SMART serkin_6 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1114 355 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 17 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Tan09g1114 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g1114 355 SUPERFAMILY Protein kinase-like (PK-like) 55 337 IPR011009 -
Tan09g1114 355 FunFam Mitogen-activated protein kinase kinase 6 41 150 - -
Tan09g1114 355 CDD PKc_MAPKK_plant_like 69 335 - -
Tan09g1114 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1114 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1114 K20603 - - csv:101204545 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2167 Tan-Chr5:72452973 Tan09g1114 Tan-Chr9:63452776 1.70E-59 dispersed
Tan08g0445 Tan-Chr8:4250686 Tan09g1114 Tan-Chr9:63452776 2.00E-29 dispersed
Tan09g1114 Tan-Chr9:63452776 Tan11g1341 Tan-Chr11:11645114 8.80E-33 dispersed
Tan07g1394 Tan-Chr7:64829880 Tan09g1114 Tan-Chr9:63452776 9.70E-65 transposed
Tan08g0109 Tan-Chr8:951011 Tan09g1114 Tan-Chr9:63452776 1.60E-127 transposed
Tan08g0048 Tan-Chr8:531752 Tan09g1114 Tan-Chr9:63452776 3.60E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g1114 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 69.9 1.6e-135 479.9
Tan08g0048 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.9 5.0e-126 448.4
Tan08g0109 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 3.6e-108 389.0
Tan09g1114 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.9 7.6e-135 477.6
Tan08g0048 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 64.3 1.7e-118 423.3
Tan08g0109 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 2.2e-110 396.4
Tan07g1394 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.7 3.5e-229 791.6
Tan04g2825 . 1 375 MAP Kinase Kinase Gene Family AT1G51660 70.0 3.0e-129 459.1
Tan05g2167 . 47 310 MAP Kinase Kinase Gene Family AT1G51660 55.7 9.6e-83 304.7
Tan04g2825 . 1 375 MAP Kinase Kinase Gene Family AT3G21220 67.8 4.9e-129 458.4
Tan05g2167 . 41 312 MAP Kinase Kinase Gene Family AT3G21220 54.8 9.7e-85 311.2
Tan08g0109 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 1.1e-171 600.1
Tan09g1114 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.9 1.2e-119 427.2
Tan08g0048 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.1 1.9e-107 386.7
Tan05g2167 . 1 310 MAP Kinase Kinase Gene Family AT1G18350 63.0 1.9e-108 389.8
Tan04g2825 . 83 342 MAP Kinase Kinase Gene Family AT1G18350 53.2 1.9e-76 283.5
Tan05g2167 . 1 298 MAP Kinase Kinase Gene Family AT3G06230 52.3 1.1e-81 300.8
Tan05g2167 . 1 310 MAP Kinase Kinase Gene Family AT1G73500 65.5 1.8e-114 409.8
Tan04g2825 . 83 342 MAP Kinase Kinase Gene Family AT1G73500 52.8 3.0e-77 286.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68038 PF00069 Pkinase 7.40E-72 CL0016 Tan PK