Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1181 ATGATGATCGGCGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTGACGATACCGGAGGAACCTGCGAGCGAGACGCGGTTTCCTTATCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGCGATTATTCTCCCTATCATCTGCAGGAAGTCCTAGCGGCATTCCAGCGATATCTGCCTCCGACGAACGAGTCAGAGATTGAATCTGATTCGGAGTTGTCCGGCCGGGAATCGGACGTGCCGGTGGATGCTTACTCCTGCGATCATTTTAGGATTTTCGAGTTCAAGGTGAGGAAGTGCACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCCGGTACGGCGTGCCCTGACTTTCGAAAAGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTGTTCGAGTGTTGGCTCCATCCTTCTCGCTACAGGACGCAGCCGTGTAAGGACGGGACCAACTGTCGAAGGAGAGTCTGTTTCTTCGCTCACACTCCTGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAGGCGCGCACTCGCCTGACTCATATGATGAATCTCCACTGCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTCTCTGTTTCACCGTCAGCAACTCCGGTGGACTCTCCACCGATGTCGCCAATGACTCGGTCGCTCGGCCGGTCTCTTGGCTCGAGTTCCATCAATGAAATGGTGGCATCCCTTCGGAACATGCATCTGAGCAAGGTCAAGTCTCTACCATCTTCCTGGAATGTTCAAATTGGATCTCCCGGTTATCCGTCTCGAATCCGCCCTGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCGACTGGTCCTGGAGTTGGGCTGCTAGACTTCATGGACCATGGGTTTGGGGAGGAACCGGCGATGGAGCGAGTCGAATCGGGAAGGGAGCTGAGGGCGAAGATGCTGCAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGCTGATACAAGTCCTTCAATGAACACACCGGACGTTGATTGGGTATCAGAGCTGGTGAAGTGA 1155 54.72 MMIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNANGGDYSPYHLQEVLAAFQRYLPPTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPSRYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRGAHSPDSYDESPLRQSLDGSCAKSLPFLSSPVSVSPSATPVDSPPMSPMTRSLGRSLGSSSINEMVASLRNMHLSKVKSLPSSWNVQIGSPGYPSRIRPGFCSLPTTPTRAPTGPGVGLLDFMDHGFGEEPAMERVESGRELRAKMLQKLSKENSLDLADTSPSMNTPDVDWVSELVK 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 64142276 64144097 + Tan0022149.1 Tan09g1181 763524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1181 384 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 161 IPR000571 GO:0046872(InterPro)
Tan09g1181 384 MobiDBLite consensus disorder prediction 199 223 - -
Tan09g1181 384 SUPERFAMILY CCCH zinc finger 135 165 IPR036855 GO:0046872(InterPro)
Tan09g1181 384 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872(InterPro)
Tan09g1181 384 Gene3D - 136 200 - -
Tan09g1181 384 PANTHER UNKEMPT FAMILY MEMBER 50 384 IPR045234 -
Tan09g1181 384 SMART c3hfinal6 171 194 IPR000571 GO:0046872(InterPro)
Tan09g1181 384 SMART c3hfinal6 136 162 IPR000571 GO:0046872(InterPro)
Tan09g1181 384 FunFam Zinc finger CCCH domain-containing protein 66 94 162 - -
Tan09g1181 384 MobiDBLite consensus disorder prediction 206 223 - -
Tan09g1181 384 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1668 Tan-Chr2:77610667 Tan09g1181 Tan-Chr9:64142276 1.20E-65 dispersed
Tan02g0199 Tan-Chr2:1713933 Tan09g1181 Tan-Chr9:64142276 2.40E-60 transposed
Tan04g1310 Tan-Chr4:13503662 Tan09g1181 Tan-Chr9:64142276 3.50E-46 transposed
Tan04g2421 Tan-Chr4:83011691 Tan09g1181 Tan-Chr9:64142276 2.90E-51 transposed
Tan08g0088 Tan-Chr8:805672 Tan09g1181 Tan-Chr9:64142276 5.40E-132 transposed
Tan08g1420 Tan-Chr8:58019450 Tan09g1181 Tan-Chr9:64142276 1.40E-50 transposed
Tan01g4650 Tan-Chr1:112358561 Tan09g1181 Tan-Chr9:64142276 5.20E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28337 PF00642 zf-CCCH 1.70E-06 CL0537 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1181 - - - 0.0