Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1224 ATGGCTGATCAGCTTATTGAGAATGAGCCTAGAATTTTAAACTCTTCGTGGTCGTCGTCGTCATCGCCGCCGTCGTCGTCGTCGTCGGGGGAGAACGATCAGTCAGGGGCGGTGATGGCGGTCGAGTCGAACCGGAAACGGGCGAAGCGGCCGAGGGAAAATAGCAACAGCAAGCACCCGGTTTTCCGTGGGGTCCGAATGAGGGCATGGGGCAAATGGGTTTCGGAAATTCGTGAGCCCCGAAAAAAGAGTCGGATCTGGCTCGGCACTTTCTCCACCCCGGAAATGGCCGCACGTGCCCACGACGTCGCCGCTTTAACCATCAAAGGCAACTCCGCCATCCTCAACTTCCCCGAACTCGCCGATCAATTCCCCCGACCCGCTTCCAACTCCCCCCGTGACGTACAGGCCGCCGCCGCCAAAGCCGCCTCCATGGAAATCCCCACCCCTCCCCCGCCGCCGTCATCTTCCTCCTCCTCTCCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTTATGTCCGTCGACGCCGGAGGAATTAAGCGAAATCGTGGAGCTTCCGAGTTTGGGGACGAGTTACGAAACGGCCGAGTTAGGGAACGAGTTTGTATTCGTTGACTCAGTGGAAGGTTGGCTCTATTCTTACCCATGGTATCACAGAGTGAATAATGTGCATCAAGAAGAAGACTATGGGTTTTTCAGAGACCAGATTTCAATGCCGGATTATACAGAGAGTTTGATTCCAACACCTACAGCCTTTGAAGCTAATTTCTTATGGCAACATTAA 786 54.83 MADQLIENEPRILNSSWSSSSSPPSSSSSGENDQSGAVMAVESNRKRAKRPRENSNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEIPTPPPPPSSSSSSPSSSSSSSSSSLCPSTPEELSEIVELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYHRVNNVHQEEDYGFFRDQISMPDYTESLIPTPTAFEANFLWQH 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 64693612 64694936 - Tan0005854.1 Tan09g1224 763567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1224 261 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1224 261 MobiDBLite consensus disorder prediction 43 59 - -
Tan09g1224 261 MobiDBLite consensus disorder prediction 9 39 - -
Tan09g1224 261 MobiDBLite consensus disorder prediction 159 177 - -
Tan09g1224 261 MobiDBLite consensus disorder prediction 1 61 - -
Tan09g1224 261 CDD AP2 62 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1224 261 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677(InterPro)
Tan09g1224 261 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1224 261 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1224 261 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1224 261 SMART rav1_2 61 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1224 261 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Tan09g1224 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 206 IPR051032 -
Tan09g1224 261 MobiDBLite consensus disorder prediction 125 177 - -
Tan09g1224 261 Pfam AP2 domain 60 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2561 Tan-Chr2:94197080 Tan09g1224 Tan-Chr9:64693612 2.40E-44 dispersed
Tan06g0265 Tan-Chr6:2144087 Tan09g1224 Tan-Chr9:64693612 8.90E-39 dispersed
Tan09g1224 Tan-Chr9:64693612 Tan10g0052 Tan-Chr10:874216 2.60E-34 dispersed
Tan01g2062 Tan-Chr1:23587414 Tan09g1224 Tan-Chr9:64693612 7.30E-38 transposed
Tan04g2681 Tan-Chr4:86246156 Tan09g1224 Tan-Chr9:64693612 1.00E-35 wgd
Tan08g0138 Tan-Chr8:1200833 Tan09g1224 Tan-Chr9:64693612 3.60E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28340 PF00847 AP2 2.30E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1224 K09286 - csv:101219745 332.798