Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1264 ATGGGGGAAGTAGAGAATCGAGAGATGGATAATTTGCCCCCGCCAAATGCTCAAACGGATACTGCGGAACCGGGTAACGTGGTTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCAGAGCACCCTCATTTTCAGGCTCAGTCACCCGCCGTGATGGTAGCGCAGAATCAGTCGCAGCAAAAATCCCCACAACATTTGATGGTTTTGCCCATTGGAACACAATCGCCTCATCCTGTGAGAAAGCCAGATTCTCCGAAGTCAAGATCAAGGTCTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGCTTTGCATCTGGAATATACTGCGATGGTTGCAATTGTGCAAATTGCTATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACCACTTTAGAACGGAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACGAGAGAGCAGGGATGAGATTGGAGAGGTCGTAATGCTGGTAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGTAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGAAGAGAGACAAGCACTTTTCCATGGTGACCATGTCAACAACATGGCTTATCTTCAGCAGGCAGCCAATGCTGCAATAACGGGAGCTATTGGATCCTCCGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGTTTTGGCACTACAGGGAAGGATCCCCCCCTCAACAGCATATCACAATTTCATCAGGCTAATAATATATTGTCTTCTGGTGCGTCTGCATCATCTCCCCTCCCTGTTGCTCATCTTGGCAGCCCTGCAGCCCCGGGGCCTTCAAAGTTTTCATTCAGATCCCTATTGGCAGACCTCATCCAGCCGAACGACTTCAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGTGAAGCTGCCAAGAAATTAGCAGAACAAAGAATTTCTGAGAAGCAGATGAATGATCCACCACAGAATTCCCGAGCTTCGTCAACTGGAGATAGGTCACAGCATCAGAAGGCAGACGAGAAAGCTGCAGATGGCGAGCGTGGAAGTTTAAACCAAGGTGATAGAATTGTACATGATAATTCCAATTCAGATAGTTCGGATACGACAAGAGCAAGGCCAATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAAAGAGATACAATGTTCATGGGAGCTGCTCCAGCCGATGGGTTGGCAGGCCATGGTTGCAACACATCATCACACGTGCCTGATAAATCTGTGTCAGAAGTCTACATAGAGCAGGAGCGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCGTCACTCTTGGAGAGATAAAAGAAACAAAATTCACTAGAAGCGAAGTGAGGAATGAAAGTCACAGCAACAATTTCACCTCAAATAGTGGTTGCCAACAGAGAACTATTAGCAATGGGGTCGTAAAAAATGTCGCTCTCTCGGCACCCAGAATACCATCGCCAATCGGTACTGCAGCTCGTCATCCTAGCAATGATCTGCTACCCAAAATCCTACCCCTTCCTGAAAATGGGAAGAGTAAACCAGAAATTGGCAGAGAAGTATAG 1767 45.5 MGEVENREMDNLPPPNAQTDTAEPGNVVSSDVPAKKLARQLDFTGFGGAVLPEHPHFQAQSPAVMVAQNQSQQKSPQHLMVLPIGTQSPHPVRKPDSPKSRSRSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEASRREAVETTLERNPNAFRPKIASSPHGTRESRDEIGEVVMLVKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVNNMAYLQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGTTGKDPPLNSISQFHQANNILSSGASASSPLPVAHLGSPAAPGPSKFSFRSLLADLIQPNDFKELCSVLVVLSSEAAKKLAEQRISEKQMNDPPQNSRASSTGDRSQHQKADEKAADGERGSLNQGDRIVHDNSNSDSSDTTRARPMSPGTLALMCDERDTMFMGAAPADGLAGHGCNTSSHVPDKSVSEVYIEQERIVLTKFRDCLNKLVTLGEIKETKFTRSEVRNESHSNNFTSNSGCQQRTISNGVVKNVALSAPRIPSPIGTAARHPSNDLLPKILPLPENGKSKPEIGREV 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 64953195 64960372 + Tan0009189.1 Tan09g1264 763607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1264 588 MobiDBLite consensus disorder prediction 1 33 - -
Tan09g1264 588 MobiDBLite consensus disorder prediction 396 417 - -
Tan09g1264 588 MobiDBLite consensus disorder prediction 374 441 - -
Tan09g1264 588 ProSiteProfiles CRC domain profile. 114 238 IPR005172 -
Tan09g1264 588 MobiDBLite consensus disorder prediction 94 113 - -
Tan09g1264 588 MobiDBLite consensus disorder prediction 555 588 - -
Tan09g1264 588 MobiDBLite consensus disorder prediction 379 395 - -
Tan09g1264 588 MobiDBLite consensus disorder prediction 83 113 - -
Tan09g1264 588 SMART CXC_2 113 153 IPR033467 -
Tan09g1264 588 SMART CXC_2 198 239 IPR033467 -
Tan09g1264 588 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 115 150 IPR005172 -
Tan09g1264 588 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
Tan09g1264 588 PANTHER TESMIN/TSO1-RELATED 52 511 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Tan09g1264 588 MobiDBLite consensus disorder prediction 12 26 - -
Tan09g1264 588 MobiDBLite consensus disorder prediction 418 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1264 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2609 Tan-Chr4:85297328 Tan09g1264 Tan-Chr9:64953195 1.10E-09 transposed
Tan06g2503 Tan-Chr6:77698852 Tan09g1264 Tan-Chr9:64953195 1.80E-32 transposed
Tan10g0801 Tan-Chr10:6724208 Tan09g1264 Tan-Chr9:64953195 2.20E-31 transposed
Tan08g0159 Tan-Chr8:1354511 Tan09g1264 Tan-Chr9:64953195 5.10E-179 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g0159 . 31 519 CPP Transcription Factor Family AT2G20110 57.5 7.2e-143 505.0
Tan09g1264 . 34 541 CPP Transcription Factor Family AT2G20110 50.4 2.6e-124 443.4
Tan08g0159 . 29 526 CPP Transcription Factor Family AT4G29000 58.7 5.7e-157 552.0
Tan09g1264 . 28 540 CPP Transcription Factor Family AT4G29000 53.3 1.0e-142 504.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28343 PF03638 TCR 3.10E-12 No_clan Tan TF