Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1340 ATGCTCAAAGTTGGGCGATTCTTTTACTCTCCTTGCATTAAGAAACCACAGCATGTTGGGGGTGGTTTGCAAGCATGGCGTGGCTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCACTAAACATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCCGTCATTGATTTTGTCGCTCAAATTTTGAACAAAGATGTGTATTCAAGACCATTGTCCGATGCTGATCGGATCAAGGTTAAAAAAGTACTTAGAGGTGTAAAAGTTGAAGTTACACACAGAGGAAATGTACGAAGGAAATATCGGATTTCAGGACTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAGTACTTCCAAGAGATGTATGGATATACCATTCAGTATACACATTTACCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAATTATTTACCCATGGAGGCATGTAAGATACTTAAAGGACAGAGATACACGAAAGGACTGAATGAAAAGCAAATAACTTCCTTGTTGAAGGTTTCATGCCAAAGACCATCTGATCAAGAAATGGACATTTTACAGACTGTTCATCAGAATGCATATGAGGAAGATCCATACGCGCAAGAGTTTGGAATCAGCATCGACAGCAAGCTTACATCAGTTGAAGCACGAGTCCTTCCATCTCCATGGCTAAAGTTTCATGACACGGGAAAAGAGAAGGAACATCTGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTAATAAATGGAAGTGTTGTAAGATACTGGGCTTGTATCAATTTCTCACGCAACGTCCAAGAGAGCATAGCTCGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAATCTCTGGCATGGAATTTAACCCAGATCCTGCAATTCCTGTATACTCAGCAAGACCAGATCAAGTGAAGAAGGCCTTAAAATTTGTATATACTGCAGTTTATAACAAACATGAAGGGAAAGAGTTAGAGTTACTGATAGCTATTCTTCCCGACAACAATGGCTCTTTATACGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCCCAGTGTTGTCTAACAAAGCACGTCTTCAAGAAGAGCAGACAGTACTTGGCGAATGTGTCACTTAAGATCAACGTCAAGATGGGTGGAAGAAACACTGTTCTATTAGATGCTTTGCGGTCAAGAATTCCACTAGTCAGTGACATACCAACAATAATCTTTGGAGCTGATGTCACCCATCCAGAATCTGGAGAGGATTCTCTTCCATCAATAGCTGCCGTTGTGGCTTCCCAAGATTGGCCAGAAGTTTCAAAATATGCTGGATTGGTTTGTGCTCAGCCTCACCGAGAAGAACTGATTCAAGATTTATTCAAAACATGGAAAGATCCTCATCGAGGCACGGTTGCTGGGGGCATGATAAGGGAGCTCTTGCTTTCATTTAAGAAGGCCACTGGACAAAAACCATTAAGGATCATATTCTACAGGGATGGTGTCAGTGAGGGTCAGTTCTACCAGGTTCTACTGCACGAACTTGATGCCATACGAAAGGCTTGTGCTTCACTAGAATCAAGTTACCAACCTCCAGTAACTTTTATCATTGTCCAAAAGCGACACCATACCAGACTTTTTGCATCCAATCACAATGATAGGAGTAGCACTGACAAGAGTGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGTCATCCAACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGTACGAGTCGTCCCGCCCATTATCATGTTCTTTGGGATGAGAACAATTTCAGTGCTGATGACATTCAATCTCTGACTAATAACCTCTGTTACACGTATGCGCGGTGCACAAGATCAGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTAGCAGCGTACAGAGCTCGATTCTACGTGGAACCCGACGCCCAGGAGAATGCCAAAAGGTGCTGCACTCGAACCACAAATGGGTCCTGCGTCCGGCCTCTGCCTGCACTGAAAGAGAGAGTGAAAAATGTAATGTTCTATTGTTGA 2106 42.59 MLKVGRFFYSPCIKKPQHVGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRPLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDILQTVHQNAYEEDPYAQEFGISIDSKLTSVEARVLPSPWLKFHDTGKEKEHLPQVGQWNMMNKKVINGSVVRYWACINFSRNVQESIARGFCQQLVQMCQISGMEFNPDPAIPVYSARPDQVKKALKFVYTAVYNKHEGKELELLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVSKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLESSYQPPVTFIIVQKRHHTRLFASNHNDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADDIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDAQENAKRCCTRTTNGSCVRPLPALKERVKNVMFYC 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 65709431 65715375 + Tan0002929.2 Tan09g1340 763683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1340 701 SMART DUF1785_2 2 54 IPR014811 -
Tan09g1340 701 FunFam Argonaute 10 233 406 - -
Tan09g1340 701 SMART Piwi_a_2 343 664 IPR003165 GO:0003676(InterPro)
Tan09g1340 701 Pfam Mid domain of argonaute 252 329 IPR032473 -
Tan09g1340 701 SUPERFAMILY PAZ domain 49 209 IPR036085 GO:0005515(InterPro)
Tan09g1340 701 CDD PAZ_argonaute_like 54 168 - -
Tan09g1340 701 ProSiteProfiles PAZ domain profile. 56 169 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan09g1340 701 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 670 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Tan09g1340 701 Gene3D paz domain 48 173 - -
Tan09g1340 701 FunFam Protein argonaute-2 48 174 - -
Tan09g1340 701 Gene3D - 412 701 IPR036397 GO:0003676(InterPro)
Tan09g1340 701 SUPERFAMILY Ribonuclease H-like 332 665 IPR012337 -
Tan09g1340 701 SMART PAZ_2_a_3 59 191 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan09g1340 701 ProSiteProfiles Piwi domain profile. 343 664 IPR003165 GO:0003676(InterPro)
Tan09g1340 701 Pfam PAZ domain 59 185 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Tan09g1340 701 Gene3D - 233 406 - -
Tan09g1340 701 Pfam Argonaute linker 1 domain 4 53 IPR014811 -
Tan09g1340 701 CDD Piwi_ago-like 213 662 IPR045246 -
Tan09g1340 701 FunFam protein argonaute 10-like 412 701 - -
Tan09g1340 701 Pfam Piwi domain 344 662 IPR003165 GO:0003676(InterPro)
Tan09g1340 701 Pfam Argonaute linker 2 domain 198 241 IPR032472 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1340 Tan-Chr9:65709431 Tan09g1342 Tan-Chr9:65709431 0.00E+00 dispersed
Tan09g1339 Tan-Chr9:65705767 Tan09g1340 Tan-Chr9:65709431 0.00E+00 tandem
Tan09g1340 Tan-Chr9:65709431 Tan09g1341 Tan-Chr9:65709431 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1340 K11593 - csv:101213206 1375.53