Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan09g1394 | ATGAAAGGGGAAGTACAATTGGTATCGTCCATTGCCCAAAACCCTAGTGACTCTGATCCTCTGCTTGAGAATCAGCCCGATTCATCCCATGGTGGAACCTCCCATGAAATCAAGGATGATGAGGATACTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTAGAGAGCGATGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGGGATGTTCTCCTTGTGTTTCTAGCTGTCCAAACTTTAATAGCTGCAATGGGTGGTTACGCATATATTATGGACAAAGACGGGGCATTCAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTACTGTATCGGGGTTCTGGCCTTCTTTGTTCTGCTTGGATTTTTTGGGCTCATACTACATTGTTCCTCCCTGAATAGTAATGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTACGGATGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCACTTGTTATTGTTTTTGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCTACTATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATACGTAGTGGAGGATCTCCACGGTTGTTATACCCCTCCAAAATTGGATCCAGAACATGAGCAACACTTGAAAATGCTACAGCTTCTGTAA | 921 | 43.87 | MKGEVQLVSSIAQNPSDSDPLLENQPDSSHGGTSHEIKDDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQLL | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 66071587 | 66075310 | - | Tan0021653.1 | Tan09g1394 | 763737 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan09g1394 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 115 | IPR013083 | - | |
| Tan09g1394 | 306 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 12 | 305 | - | - | |
| Tan09g1394 | 306 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Tan09g1394 | 306 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 43 | 108 | IPR011016 | GO:0008270(InterPro) | |
| Tan09g1394 | 306 | SUPERFAMILY | RING/U-box | 49 | 106 | - | - | |
| Tan09g1394 | 306 | CDD | RING_CH-C4HC3_MARCH | 51 | 102 | - | - | |
| Tan09g1394 | 306 | SMART | ringv_2 | 50 | 102 | IPR011016 | GO:0008270(InterPro) | |
| Tan09g1394 | 306 | MobiDBLite | consensus disorder prediction | 7 | 31 | - | - | |
| Tan09g1394 | 306 | Pfam | RING-variant domain | 51 | 101 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan03g1920 | Tan-Chr3:74407141 | Tan09g1394 | Tan-Chr9:66071587 | 2.30E-56 | dispersed | |
| Tan04g2887 | Tan-Chr4:88039933 | Tan09g1394 | Tan-Chr9:66071587 | 2.40E-27 | dispersed | |
| Tan04g2888 | Tan-Chr4:88039933 | Tan09g1394 | Tan-Chr9:66071587 | 5.40E-27 | dispersed | |
| Tan09g1394 | Tan-Chr9:66071587 | Tan09g1395 | Tan-Chr9:66071587 | 3.00E-178 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan09g1394 | - | - | - | 0.0 |