Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1407 ATGCCCAACTTTAAGAAGTTCAGAGGTGTTAGGCAGCGCCATTGGGGCTCTTGGGTTTCTGAAATTCGTCACCCTTTACTGAAGAGGAGGATATGGTTGGGGACGTTCGAGACGGCGGAGGAGGCGGCGAGAGCTTACGATCAAGCCGCGATTTTGATGAGTGGTCGAAATGCCAAAACTAATTTCCCTACAACCCAAGCTTTAGCTCCCAATGGAGACATTGACATTACAACCAAGGATTCACCAAAGGGTTTGTCTGAAATATTACAGGCCAAGCTTAAGAAATGCTGCCGGACTCCGTCGCCGTCGATGACATGTTTGAGGCTCGACACTGAGAATTCGAACATTGGCGTGTGGCAGAAGCGTGCTGGGCAGCAGTCGGCATCGAACTGGGTCATGACCGTTGAGCTCGGAAAAAAGAAGAGCCACAACAACGACGACGCAGATTCTCCGATGGATGTGGTTGCTTCCGATCAGTCTCTAGTGGCGGCGGAAGTGGCGGAGATTCGATCGGGGTTGGATGAAGAAGAGAGAATGGTGGCATTGCAAATGGTGGAGGAGCTTCTACACATCAACTATGATGATTCCAATCAACTGTGTGAGATTCAACAAGGGAAGAATGTTTATCTCTAA 633 49.45 MPNFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGRNAKTNFPTTQALAPNGDIDITTKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQQSASNWVMTVELGKKKSHNNDDADSPMDVVASDQSLVAAEVAEIRSGLDEEERMVALQMVEELLHINYDDSNQLCEIQQGKNVYL 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 66205355 66206410 - Tan0005871.1 Tan09g1407 763750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1407 210 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1407 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 134 IPR050913 -
Tan09g1407 210 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1407 210 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1407 210 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1407 210 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1407 210 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1407 210 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1407 210 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Tan09g1407 210 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3652 Tan-Chr1:101400068 Tan09g1407 Tan-Chr9:66205355 7.00E-29 dispersed
Tan04g2588 Tan-Chr4:85134294 Tan09g1407 Tan-Chr9:66205355 8.20E-49 dispersed
Tan09g1407 Tan-Chr9:66205355 Tan01g0160 Tan-Chr1:1466215 3.60E-18 dispersed
Tan01g3651 Tan-Chr1:101400068 Tan09g1407 Tan-Chr9:66205355 1.10E-56 wgd
Tan08g0245 Tan-Chr8:2147093 Tan09g1407 Tan-Chr9:66205355 2.50E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28353 PF00847 AP2 1.30E-12 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1407 - - - 0.0