Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1419 ATGTCGAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTGTACACTTCTAGTGGACCTGATTTTCAGGCTGATTTTGGCTCCTCATCAAAATGTAACAACAATAAGATGGAAATTCGAGCACCCACTACTATCGTAGCAGAGGAAAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAATAATCCTGAGATTAGTCATAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGTCAAGGGCTGCACTATTAAACAAATGA 573 42.93 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQADFGSSSKCNNNKMEIRAPTTIVAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMSRAALLNK 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 66313511 66317047 - Tan0009711.1 Tan09g1419 763762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1419 190 CDD HMG-box_SF 118 154 - -
Tan09g1419 190 FunFam axial regulator YABBY 5-like 102 160 - -
Tan09g1419 190 SUPERFAMILY HMG-box 108 157 IPR036910 -
Tan09g1419 190 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
Tan09g1419 190 Gene3D High mobility group box domain 104 159 IPR036910 -
Tan09g1419 190 PANTHER PROTEIN YABBY 6-RELATED 9 173 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1851 Tan-Chr7:70058851 Tan09g1419 Tan-Chr9:66313511 1.40E-42 dispersed
Tan08g0252 Tan-Chr8:2246320 Tan09g1419 Tan-Chr9:66313511 5.70E-44 dispersed
Tan08g0251 Tan-Chr8:2246320 Tan09g1419 Tan-Chr9:66313511 7.20E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28354 PF04690 YABBY 1.30E-69 CL0114 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1419 K25796 - csv:101215951 361.303