Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1541 ATGACAGTGGAGGGTCATTCCGTTGCTTCTGTCGGCGATGATGGCGCCACTGACCGTTTTCCTGTTGGGATGCGGGTTCTTGCTGTCGATGATGACCCTATTTGTCTCAAAGTGCTCGAAAATCTCCTCCGTAGATGCCAATATCATGTTACGACGACGAAGCAGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAATTTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTCCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCACACGGTGCGTGTGATTATCTGTTGAAACCGGTTCGAATTGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAGAACAAGTTCCCTAGTCAAGATAAGGCTCGAAATGGAGGCAGTGAGGGTGAGCAAGGTTTCTCATCAACCAGTAATGCAGACAATGCGAAATTCAATAGGAAGCGGAAGGACCAAGATGACGATGAAGATGAAGATGGAAAGGAGAATGGGTTTGATAATGACGACCCCTCAAATCAGAAGAAGCCTAGGGTAGTGTGGTCGGTTGAGTTGCACAGGAAGTTCGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCAAAGAAAATCCTGGATCTGATGAATGTTGAAGGACTGACCAGAGAAAACGTGGCAAGTCATTTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGTGCGTTCATGCGCATGGGTTCGCTTGATGGATATGGAGATTTACATGGCTTTGCAGGATCAGGACGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCAGCTGGAATGAGCCTGCGTGGAATCACCTCTTCTGGACTGATACAGCAAAACTCCCAAAATTTGAACTCCGCTATTAGTAACCTTGGGAAGCTCCAGCCAACTACTATGCTGCCTTCTAACCAAACTACTAATCTGTTGCAAGGAATTCCAACATCGCTCGAGCTCAGCCAGTTGCAAGACAGCAAGTCCACCATTCCAATTGGAAACTTCAATATAATGAATCAGACATCCGAGTTTGGAGTTCCCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAATTCAACCAATTCGATCTCCACTGCCTCATTGATGTTACAAGGAACCATGCCAACATATGGAAATCAGAATTGTCTTAGAGTGGATCCGCTTAATGGAGAAACTTTTGACATAGACATTGGTGGTTCAAATTTTTTGGATCCTGATCCTTCCAATGGAAACTGGCAGGGAGCAGCACAATTGTCTAGATTCTCAGCTACTTCTTTGACACCCAATGAAGCCTATCCCAGTGATCAATTCAATGCAATGAACTCGAGCATTTCTTCTGCCCCCTCAACGATTGGGAACGTCTCTGTTGATTTTTCCTCTAGAAGTCCAGTTTCAGCTCCCTTGCAGGATTCAAGAGGTCTGCAATGCCAGGCAGGGGTTGTTGGCAGTGTTATTCAAACTATTAATACCATACCAAAGCAGAGTTGGGAAGAGCATAAACACGATTACAGTCGAAACGTGCAGCATAATCTTGGTGCAATCAATTCTCTGGTTTCCAGCAATGGGACTCTAAACCCCTTAAGCCAGAGTTTCAATCAGAATAATAGTCTAGCATATGATAGAAAGGTCAGTTCATCTTTGTTAGTCCCATCAAATTCTGCTCCACTGTCTTTTGCTCAACATAATGTGGTCGAAAAATTGGGTCCTAACATAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAAACAAAGTCACACAATGGATCGATTCAAGGCAGTTTCGAGTCCTTGGATGATATAATGAACGCTATGATCAAACGGGTATAG 2031 43.72 MTVEGHSVASVGDDGATDRFPVGMRVLAVDDDPICLKVLENLLRRCQYHVTTTKQSIEALKMLRENRNNFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSQDKARNGGSEGEQGFSSTSNADNAKFNRKRKDQDDDEDEDGKENGFDNDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGAFMRMGSLDGYGDLHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQNSQNLNSAISNLGKLQPTTMLPSNQTTNLLQGIPTSLELSQLQDSKSTIPIGNFNIMNQTSEFGVPNSFPDSRVNIGNSTNSISTASLMLQGTMPTYGNQNCLRVDPLNGETFDIDIGGSNFLDPDPSNGNWQGAAQLSRFSATSLTPNEAYPSDQFNAMNSSISSAPSTIGNVSVDFSSRSPVSAPLQDSRGLQCQAGVVGSVIQTINTIPKQSWEEHKHDYSRNVQHNLGAINSLVSSNGTLNPLSQSFNQNNSLAYDRKVSSSLLVPSNSAPLSFAQHNVVEKLGPNIKTNADGNYLLNQTKSHNGSIQGSFESLDDIMNAMIKRV 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67275508 67279970 + Tan0007731.1 Tan09g1541 763884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1541 676 PIRSF RR_ARR_type-B 1 674 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Tan09g1541 676 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Tan09g1541 676 CDD REC_typeB_ARR-like 26 140 - -
Tan09g1541 676 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Tan09g1541 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Tan09g1541 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 375 IPR045279 GO:0009736(InterPro)
Tan09g1541 676 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Tan09g1541 676 MobiDBLite consensus disorder prediction 157 178 - -
Tan09g1541 676 SUPERFAMILY CheY-like 23 148 IPR011006 -
Tan09g1541 676 FunFam Two-component response regulator 207 270 - -
Tan09g1541 676 Gene3D - 207 270 - -
Tan09g1541 676 Gene3D - 24 189 - -
Tan09g1541 676 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Tan09g1541 676 MobiDBLite consensus disorder prediction 147 210 - -
Tan09g1541 676 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Tan09g1541 676 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0321 Tan-Chr8:2772898 Tan09g1541 Tan-Chr9:67275508 1.20E-86 dispersed
Tan08g0322 Tan-Chr8:2772898 Tan09g1541 Tan-Chr9:67275508 4.30E-153 dispersed
Tan09g1541 Tan-Chr9:67275508 Tan10g1050 Tan-Chr10:9414877 1.00E-85 dispersed
Tan09g1541 Tan-Chr9:67275508 Tan09g1542 Tan-Chr9:67275508 0.00E+00 tandem
Tan06g2744 Tan-Chr6:79755643 Tan09g1541 Tan-Chr9:67275508 1.40E-42 transposed
Tan01g3584 Tan-Chr1:100891063 Tan09g1541 Tan-Chr9:67275508 3.10E-127 wgd
Tan08g0308 Tan-Chr8:2772898 Tan09g1541 Tan-Chr9:67275508 2.10E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28357 PF00072 Response_reg 1.80E-25 CL0304 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1541 K14491 - csv:101213687 1145.18