Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1542 ATGACAGTGGAGGGTCATTCCGTTGCTTCTGTCGGCGATGATGGCGCCACTGACCGTTTTCCTGTTGGGATGCGGGTTCTTGCTGTCGATGATGACCCTATTTGTCTCAAAGTGCTCGAAAATCTCCTCCGTAGATGCCAATATCATGTTACGACGACGAAGCAGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAATTTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTCCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCACACGGTGCGTGTGATTATCTGTTGAAACCGGTTCGAATTGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAGAACAAGTTCCCTAGTCAAGATAAGGCTCGAAATGGAGGCAGTGAGGGTGAGCAAGGTTTCTCATCAACCAGTAATGCAGACAATGCGAAATTCAATAGGAAGCGGAAGGACCAAGATGACGATGAAGATGAAGATGGAAAGGAGAATGGGTTTGATAATGACGACCCCTCAAATCAGAAGAAGCCTAGGGTAGTGTGGTCGGTTGAGTTGCACAGGAAGTTCGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCAAAGAAAATCCTGGATCTGATGAATGTTGAAGGACTGACCAGAGAAAACGTGGCAAGTCATTTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGTGCGTTCATGCGCATGGGTTCGCTTGATGGATATGGAGATTTACATGGCTTTGCAGGATCAGGACGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCAGCTGGAATGAGCCTGCGTGGAATCACCTCTTCTGGACTGATACAGCAAAACTCCCAAAATTTGAACTCCGCTATTAGTAACCTTGGGAAGCTCCAGCCAACTACTATGCTGCCTTCTAACCAAACTACTAATCTGTTGCAAGGAATTCCAACATCGCTCGAGCTCAGCCAGTTGCAAGACAGCAAGTCCACCATTCCAATTGGAAACTTCAATATAATGAATCAGACATCCGAGTTTGGAGTTCCCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAATTCAACCAATTCGATCTCCACTGCCTCATTGATGTTACAAGGAACCATGCCAACATATGGAAATCAGAATTGTCTTAGAGTGGATCCGCTTAATGGAGAAACTTTTGACATAGACATTGGTGGTTCAAATTTTTTGGATCCTGATCCTTCCAATGGAAACTGGCAGGGAGCAGCACAATTGTCTAGATTCTCAGCTACTTCTTTGACACCCAATGAAGCCTATCCCAGTGATCAATTCAATGCAATGAACTCGAGCATTTCTTCTGCCCCCTCAACGATTGGGAACGTCTCTGTTGATTTTTCCTCTAGAAGTCCAGTTTCAGCTCCCTTGCAGGATTCAAGAGGTCTGCAATGCCAGGCAGGGGTTGTTGGCAGTGTTATTCAAACTATTAATACCATACCAAAGCAGAGTTGGGAAGAGCATAAACACGATTACAGTCGAAACGTGCAGCATAATCTTGGTGCAATCAATTCTCTGGTTTCCAGCAATGGGACTCTAAACCCCTTAAGCCAGAGTTTCAATCAGAATAATAGTCTAGCATATGATAGAAAGGTCAGTTCATCTTTGTTAGTCCCATCAAATTCTGCTCCACTGTCTTTTGCTCAACATAATGTGGTCGAAAAATTGGGTCCTAACATAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAAACAAAGTCACACAATGGATCGATTCAAGGCAGTTTCGAGTCCTTGGATGATATAATGAACGCTATGATCAAACGGGAACAAAATGAAATACCAGAAATGAACAGAGATTTTGGATTTGATAATTTCTCTCTAGGATCATGTATTTGA 2097 43.25 MTVEGHSVASVGDDGATDRFPVGMRVLAVDDDPICLKVLENLLRRCQYHVTTTKQSIEALKMLRENRNNFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSQDKARNGGSEGEQGFSSTSNADNAKFNRKRKDQDDDEDEDGKENGFDNDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGAFMRMGSLDGYGDLHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQNSQNLNSAISNLGKLQPTTMLPSNQTTNLLQGIPTSLELSQLQDSKSTIPIGNFNIMNQTSEFGVPNSFPDSRVNIGNSTNSISTASLMLQGTMPTYGNQNCLRVDPLNGETFDIDIGGSNFLDPDPSNGNWQGAAQLSRFSATSLTPNEAYPSDQFNAMNSSISSAPSTIGNVSVDFSSRSPVSAPLQDSRGLQCQAGVVGSVIQTINTIPKQSWEEHKHDYSRNVQHNLGAINSLVSSNGTLNPLSQSFNQNNSLAYDRKVSSSLLVPSNSAPLSFAQHNVVEKLGPNIKTNADGNYLLNQTKSHNGSIQGSFESLDDIMNAMIKREQNEIPEMNRDFGFDNFSLGSCI 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67275508 67279970 + Tan0007731.2 Tan09g1542 763885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1542 698 CDD REC_typeB_ARR-like 26 140 - -
Tan09g1542 698 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Tan09g1542 698 SUPERFAMILY CheY-like 23 148 IPR011006 -
Tan09g1542 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 383 IPR045279 GO:0009736(InterPro)
Tan09g1542 698 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Tan09g1542 698 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Tan09g1542 698 FunFam Two-component response regulator 207 270 - -
Tan09g1542 698 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Tan09g1542 698 MobiDBLite consensus disorder prediction 157 178 - -
Tan09g1542 698 Gene3D - 207 270 - -
Tan09g1542 698 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Tan09g1542 698 PIRSF RR_ARR_type-B 1 698 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Tan09g1542 698 Gene3D - 24 189 - -
Tan09g1542 698 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Tan09g1542 698 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Tan09g1542 698 MobiDBLite consensus disorder prediction 147 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3584 Tan-Chr1:100891063 Tan09g1542 Tan-Chr9:67275508 7.70E-134 dispersed
Tan09g1542 Tan-Chr9:67275508 Tan10g1050 Tan-Chr10:9414877 1.00E-85 dispersed
Tan09g1541 Tan-Chr9:67275508 Tan09g1542 Tan-Chr9:67275508 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28358 PF00072 Response_reg 1.90E-25 CL0304 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1542 K14491 - csv:101213687 1186.02