Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1547 ATGCAGCCCTGTAGTAGAGAAATGCAAAGCATCAACTCTCTCTTGAACCACTCCCAAATCACCCTTCAGGACCTCCAAGGCGACGCCCACCACCACCACCTGAATCCGCCTCCGCCGCAGATTCCGGCGTCTCATCTCCACCATTTCGATCCGGCCGCCGGCGCCTCCCACGACGACTTCCTCGAGCAAATGCTCAATACTATCCCTTCCTGTTCCTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATCAATAAGCCGACCAGAGACATCTCTGACGACCCTCACCAGAACCAGATCACCGCCACCTCTCCCGCCGCCAAGGCCGCCGTCATGCTCCAGCAACAGCTTCTCTTGTCTAGAGGCATCTCCTCCGCCGCCGACCATGGCCTCCCTCCTATGCCTCTCTCCCTCGGAAATGCCGACTTGGACCGCTCCCAAAACGACGTCGTCGATGGATCCTGCTTCCGGCCACCCAACTCGGGAGGCTCTATTCAATCGCATAGTTTCGGAGCACCAGGAAACGTGATGAACCAAGCTCCGGCCGGTGGGTCAGCCGGAGTTTCTCCATCTCAGCCGAAGCAGAAGGTCAGAGCTCGCAGAGGCCAAGCCACTGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTAGGGGGTGCAGCTGCCGTTGCTCCTCTCGTTGCTGACGTGTCCTCTGAGGGGGGTGGTGAGTGTATGCAAGGAAGTGGGGCACAAGGTGGCCGGATTTCAAACGGCGGCGGTGGCGGAAACCAAACGACGTCGTCGAACGACAGCATGACGGTGACGGAGCAGCAGGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAGGGGAAAGGCCTTTGTCTTATGCCGATCTCACTGGCGACGGCGATTTCGACGTCCACGTGTCATTCGAGGAATCCGATGATCAACGGCGGCGGTGGCGGCCACCCGGTGATGGGATCGAACGGCGAAGGACCGTCGTCGCCGAGCATGTCAGTGCTGACGGTGCAGTCGACGAGCATGGGGAACGGCTCCGTGAAGGACGCCGCCTCCGTATCGAAGCCGTGA 1248 58.09 MQPCSREMQSINSLLNHSQITLQDLQGDAHHHHLNPPPPQIPASHLHHFDPAAGASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPTRDISDDPHQNQITATSPAAKAAVMLQQQLLLSRGISSAADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSIQSHSFGAPGNVMNQAPAGGSAGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGRISNGGGGGNQTTSSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPMINGGGGGHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67332375 67336234 + Tan0001346.1 Tan09g1547 763890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1547 415 MobiDBLite consensus disorder prediction 383 415 - -
Tan09g1547 415 MobiDBLite consensus disorder prediction 188 204 - -
Tan09g1547 415 Pfam Helix-loop-helix DNA-binding domain 214 259 IPR011598 GO:0046983(InterPro)
Tan09g1547 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 269 IPR036638 GO:0046983(InterPro)
Tan09g1547 415 MobiDBLite consensus disorder prediction 158 212 - -
Tan09g1547 415 SMART finulus 215 264 IPR011598 GO:0046983(InterPro)
Tan09g1547 415 Gene3D - 204 266 IPR036638 GO:0046983(InterPro)
Tan09g1547 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 356 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Tan09g1547 415 MobiDBLite consensus disorder prediction 367 415 - -
Tan09g1547 415 MobiDBLite consensus disorder prediction 28 54 - -
Tan09g1547 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983(InterPro)
Tan09g1547 415 MobiDBLite consensus disorder prediction 297 320 - -
Tan09g1547 415 FunFam Transcription factor bHLH66 206 271 - -
Tan09g1547 415 MobiDBLite consensus disorder prediction 291 320 - -
Tan09g1547 415 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0367 Tan-Chr8:3281662 Tan09g1547 Tan-Chr9:67332375 2.50E-71 dispersed
Tan08g0368 Tan-Chr8:3281662 Tan09g1547 Tan-Chr9:67332375 2.60E-69 dispersed
Tan08g0709 Tan-Chr8:7020330 Tan09g1547 Tan-Chr9:67332375 1.30E-14 dispersed
Tan08g0710 Tan-Chr8:7020330 Tan09g1547 Tan-Chr9:67332375 1.30E-14 dispersed
Tan09g0529 Tan-Chr9:48153103 Tan09g1547 Tan-Chr9:67332375 4.30E-47 dispersed
Tan09g0530 Tan-Chr9:48153103 Tan09g1547 Tan-Chr9:67332375 1.70E-33 dispersed
Tan09g1547 Tan-Chr9:67332375 Tan10g1178 Tan-Chr10:11869697 3.90E-16 dispersed
Tan06g1037 Tan-Chr6:9374203 Tan09g1547 Tan-Chr9:67332375 2.10E-46 transposed
Tan07g2333 Tan-Chr7:74535049 Tan09g1547 Tan-Chr9:67332375 1.90E-17 transposed
Tan08g0707 Tan-Chr8:7020330 Tan09g1547 Tan-Chr9:67332375 1.30E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28359 PF00010 HLH 1.60E-09 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1547 - - - 0.0