Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1552 ATGAAACAGGAGTGGCCCGGTACGATTTCAAAAACCAGGGTGAATGCAATTGCAGAAGGTTCAGATTCGAGCTGCATCACTTGCCCATTCCCTGCAAACGGATGCAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCCCAAATTTATGCCAATCACCAGCGCATTTGGCTTGGGACATTCAAGTCGGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAAGTCACAATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGCTAAAGGACGGTTCCTACACAACCAAATTTGCTGAGTATTTGAGAGATCATTCCGAGGGTGCTCAAACATCAGCCGGTCTCTCTGCAGCAAAGATGAATAACAATGAAGGGACATCAATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTCCCTCACATATCAGCTAGCACAATAGAAAATGAGGAACACGTCGATGACGATCGTGACGTGCAGCTAATATTTTTTGACAACATGATGAGACAATGGAAATTTCGATATTGTTACTGGAAAAGCAGCCAGAGCTACGTGTTTACACGAGGCTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAACGACACAATAGCTTTCTACTTGTGTGAAGCGGCGAAGGCAAGTGATGCTAAAACTACATTCTGTGTGGTGGATGTTAAAAATCGTAACAACAATGGTGCCATCTCGGTTGAGAACGAAATGACGAGTAGTGAAATGCAGCTAGATTTGGGGAGTGAAAAAGTTGAGGAATTGGTGTCACCTAAGCACAAGCACATAGATGATGAACTAAAAGAGGATGCTGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAATGA 1029 42.37 MKQEWPGTISKTRVNAIAEGSDSSCITCPFPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQKLYTTEALLNMLKDGSYTTKFAEYLRDHSEGAQTSAGLSAAKMNNNEGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASTIENEEHVDDDRDVQLIFFDNMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDAKTTFCVVDVKNRNNNGAISVENEMTSSEMQLDLGSEKVEELVSPKHKHIDDELKEDAEVKGFKLFGVHIK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67365045 67366667 + Tan0007947.1 Tan09g1552 763895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1552 342 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677(InterPro)
Tan09g1552 342 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1552 342 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Tan09g1552 342 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1552 342 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 340 IPR044800 GO:0003700(InterPro)
Tan09g1552 342 Gene3D - 162 292 IPR015300 -
Tan09g1552 342 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1552 342 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Tan09g1552 342 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677(InterPro)
Tan09g1552 342 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Tan09g1552 342 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1552 342 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
Tan09g1552 342 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1552 Tan-Chr9:67365045 Tan11g1931 Tan-Chr11:29672929 7.40E-45 dispersed
Tan09g1552 Tan-Chr9:67365045 Tan09g0896 Tan-Chr9:60445322 2.40E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28360 PF02362 B3 3.70E-24 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1552 K09287 - csv:101212246 587.8