Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan09g1552 | ATGAAACAGGAGTGGCCCGGTACGATTTCAAAAACCAGGGTGAATGCAATTGCAGAAGGTTCAGATTCGAGCTGCATCACTTGCCCATTCCCTGCAAACGGATGCAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCCCAAATTTATGCCAATCACCAGCGCATTTGGCTTGGGACATTCAAGTCGGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAAGTCACAATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGCTAAAGGACGGTTCCTACACAACCAAATTTGCTGAGTATTTGAGAGATCATTCCGAGGGTGCTCAAACATCAGCCGGTCTCTCTGCAGCAAAGATGAATAACAATGAAGGGACATCAATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTCCCTCACATATCAGCTAGCACAATAGAAAATGAGGAACACGTCGATGACGATCGTGACGTGCAGCTAATATTTTTTGACAACATGATGAGACAATGGAAATTTCGATATTGTTACTGGAAAAGCAGCCAGAGCTACGTGTTTACACGAGGCTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAACGACACAATAGCTTTCTACTTGTGTGAAGCGGCGAAGGCAAGTGATGCTAAAACTACATTCTGTGTGGTGGATGTTAAAAATCGTAACAACAATGGTGCCATCTCGGTTGAGAACGAAATGACGAGTAGTGAAATGCAGCTAGATTTGGGGAGTGAAAAAGTTGAGGAATTGGTGTCACCTAAGCACAAGCACATAGATGATGAACTAAAAGAGGATGCTGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAATGA | 1029 | 42.37 | MKQEWPGTISKTRVNAIAEGSDSSCITCPFPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQKLYTTEALLNMLKDGSYTTKFAEYLRDHSEGAQTSAGLSAAKMNNNEGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASTIENEEHVDDDRDVQLIFFDNMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDAKTTFCVVDVKNRNNNGAISVENEMTSSEMQLDLGSEKVEELVSPKHKHIDDELKEDAEVKGFKLFGVHIK | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 67365045 | 67366667 | + | Tan0007947.1 | Tan09g1552 | 763895 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan09g1552 | 342 | Pfam | B3 DNA binding domain | 167 | 266 | IPR003340 | GO:0003677(InterPro) | |
Tan09g1552 | 342 | ProSiteProfiles | AP2/ERF domain profile. | 45 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan09g1552 | 342 | CDD | B3_DNA | 166 | 278 | IPR003340 | GO:0003677(InterPro) | |
Tan09g1552 | 342 | Gene3D | AP2/ERF domain | 44 | 101 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan09g1552 | 342 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 44 | 340 | IPR044800 | GO:0003700(InterPro) | |
Tan09g1552 | 342 | Gene3D | - | 162 | 292 | IPR015300 | - | |
Tan09g1552 | 342 | SMART | rav1_2 | 45 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan09g1552 | 342 | SUPERFAMILY | DNA-binding pseudobarrel domain | 166 | 266 | IPR015300 | - | |
Tan09g1552 | 342 | ProSiteProfiles | B3 DNA-binding domain profile. | 167 | 282 | IPR003340 | GO:0003677(InterPro) | |
Tan09g1552 | 342 | FunFam | AP2 domain-containing protein RAP2.8 | 44 | 101 | - | - | |
Tan09g1552 | 342 | CDD | AP2 | 44 | 102 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan09g1552 | 342 | SUPERFAMILY | DNA-binding domain | 44 | 101 | IPR016177 | GO:0003677(InterPro) | |
Tan09g1552 | 342 | SMART | B3_2 | 167 | 282 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan09g1552 | Tan-Chr9:67365045 | Tan11g1931 | Tan-Chr11:29672929 | 7.40E-45 | dispersed | |
Tan09g1552 | Tan-Chr9:67365045 | Tan09g0896 | Tan-Chr9:60445322 | 2.40E-83 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28360 | PF02362 | B3 | 3.70E-24 | CL0405 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan09g1552 | K09287 | - | csv:101212246 | 587.8 |