Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1552 ATGAAACAGGAGTGGCCCGGTACGATTTCAAAAACCAGGGTGAATGCAATTGCAGAAGGTTCAGATTCGAGCTGCATCACTTGCCCATTCCCTGCAAACGGATGCAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCCCAAATTTATGCCAATCACCAGCGCATTTGGCTTGGGACATTCAAGTCGGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAAGTCACAATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGCTAAAGGACGGTTCCTACACAACCAAATTTGCTGAGTATTTGAGAGATCATTCCGAGGGTGCTCAAACATCAGCCGGTCTCTCTGCAGCAAAGATGAATAACAATGAAGGGACATCAATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTCCCTCACATATCAGCTAGCACAATAGAAAATGAGGAACACGTCGATGACGATCGTGACGTGCAGCTAATATTTTTTGACAACATGATGAGACAATGGAAATTTCGATATTGTTACTGGAAAAGCAGCCAGAGCTACGTGTTTACACGAGGCTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAACGACACAATAGCTTTCTACTTGTGTGAAGCGGCGAAGGCAAGTGATGCTAAAACTACATTCTGTGTGGTGGATGTTAAAAATCGTAACAACAATGGTGCCATCTCGGTTGAGAACGAAATGACGAGTAGTGAAATGCAGCTAGATTTGGGGAGTGAAAAAGTTGAGGAATTGGTGTCACCTAAGCACAAGCACATAGATGATGAACTAAAAGAGGATGCTGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAATGA 1029 42.37 MKQEWPGTISKTRVNAIAEGSDSSCITCPFPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQKLYTTEALLNMLKDGSYTTKFAEYLRDHSEGAQTSAGLSAAKMNNNEGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASTIENEEHVDDDRDVQLIFFDNMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDAKTTFCVVDVKNRNNNGAISVENEMTSSEMQLDLGSEKVEELVSPKHKHIDDELKEDAEVKGFKLFGVHIK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67365045 67366667 + Tan0007947.1 Tan09g1552 763895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1552 342 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677(InterPro)
Tan09g1552 342 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1552 342 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Tan09g1552 342 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1552 342 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 340 IPR044800 GO:0003700(InterPro)
Tan09g1552 342 Gene3D - 162 292 IPR015300 -
Tan09g1552 342 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1552 342 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Tan09g1552 342 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677(InterPro)
Tan09g1552 342 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Tan09g1552 342 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g1552 342 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
Tan09g1552 342 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1552 K09287 - - csv:101212246 587.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1552 Tan-Chr9:67365045 Tan11g1931 Tan-Chr11:29672929 7.40E-45 dispersed
Tan09g1552 Tan-Chr9:67365045 Tan09g0896 Tan-Chr9:60445322 2.40E-83 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan08g1679 . 1 162 RAV Transcription Factor Family AT2G36080 61.3 2.5e-49 192.6
Tan06g1845 . 74 212 RAV Transcription Factor Family AT2G36080 59.9 8.7e-42 167.5
Tan07g0156 . 38 149 RAV Transcription Factor Family AT2G36080 68.7 6.2e-40 161.4
Tan01g1185 . 55 169 RAV Transcription Factor Family AT2G36080 68.6 8.1e-40 161.0
Tan01g1186 . 55 169 RAV Transcription Factor Family AT2G36080 68.6 8.1e-40 161.0
Tan04g0897 . 191 320 RAV Transcription Factor Family AT2G36080 58.8 7.6e-38 154.5
Tan06g1845 . 74 326 RAV Transcription Factor Family AT2G46870 51.4 2.8e-59 226.5
Tan07g0156 . 22 154 RAV Transcription Factor Family AT2G46870 80.7 3.8e-56 216.1
Tan01g1185 . 55 165 RAV Transcription Factor Family AT2G46870 86.6 1.1e-52 204.5
Tan01g1186 . 55 165 RAV Transcription Factor Family AT2G46870 86.6 1.1e-52 204.5
Tan04g0897 . 197 309 RAV Transcription Factor Family AT2G46870 68.1 2.5e-39 160.2
Tan08g1679 . 34 145 RAV Transcription Factor Family AT2G46870 64.3 3.0e-37 153.3
Tan11g1931 . 175 289 RAV Transcription Factor Family AT2G46870 65.3 1.2e-36 151.4
Tan08g1679 . 1 182 RAV Transcription Factor Family AT3G11580 51.0 4.7e-43 172.2
Tan06g1845 . 74 190 RAV Transcription Factor Family AT3G11580 64.8 4.4e-41 165.6
Tan07g0156 . 38 147 RAV Transcription Factor Family AT3G11580 62.0 2.0e-38 156.8
Tan01g1185 . 48 164 RAV Transcription Factor Family AT3G11580 59.4 3.5e-38 156.0
Tan01g1186 . 48 164 RAV Transcription Factor Family AT3G11580 59.4 3.5e-38 156.0
Tan06g1845 . 72 318 RAV Transcription Factor Family AT3G61970 55.0 1.1e-55 214.5
Tan07g0156 . 32 155 RAV Transcription Factor Family AT3G61970 77.2 1.1e-52 204.5
Tan04g0897 . 197 309 RAV Transcription Factor Family AT3G61970 68.4 1.8e-39 160.6
Tan08g1679 . 34 145 RAV Transcription Factor Family AT3G61970 66.1 6.9e-39 158.7
Tan07g0156 . 39 155 RAV Transcription Factor Family AT4G01500 66.9 7.5e-42 168.7
Tan01g1185 . 56 177 RAV Transcription Factor Family AT4G01500 62.8 1.7e-38 157.5
Tan01g1186 . 56 177 RAV Transcription Factor Family AT4G01500 62.8 1.7e-38 157.5
Tan08g1679 . 34 234 RAV Transcription Factor Family AT5G06250 54.5 3.0e-49 193.0
Tan06g1845 . 75 183 RAV Transcription Factor Family AT5G06250 68.1 5.1e-41 165.6
Tan01g1185 . 56 164 RAV Transcription Factor Family AT5G06250 68.9 1.1e-40 164.5
Tan01g1186 . 56 164 RAV Transcription Factor Family AT5G06250 68.9 1.1e-40 164.5
Tan07g0156 . 39 147 RAV Transcription Factor Family AT5G06250 64.7 2.8e-39 159.8
Tan11g1931 . 173 284 RAV Transcription Factor Family AT5G06250 65.8 9.9e-37 151.4
Tan04g0897 . 197 305 RAV Transcription Factor Family AT5G06250 62.4 1.7e-36 150.6
Tan09g1552 . 45 342 RAV Transcription Factor Family AT1G50680 53.2 5.5e-85 312.0
Tan09g0896 . 52 327 RAV Transcription Factor Family AT1G50680 54.2 7.7e-79 291.6
Tan09g1552 . 41 342 RAV Transcription Factor Family AT1G51120 52.5 7.5e-85 311.6
Tan09g0896 . 52 279 RAV Transcription Factor Family AT1G51120 62.2 8.1e-79 291.6
Tan04g0897 . 1 361 RAV Transcription Factor Family AT1G13260 62.1 3.1e-107 386.0
Tan11g1931 . 1 328 RAV Transcription Factor Family AT1G13260 59.4 2.8e-92 336.3
Tan07g0156 . 40 153 RAV Transcription Factor Family AT1G13260 68.7 4.0e-38 156.4
Tan06g1845 . 76 183 RAV Transcription Factor Family AT1G13260 69.7 4.4e-37 152.9
Tan04g0897 . 6 359 RAV Transcription Factor Family AT3G25730 59.4 8.7e-99 357.8
Tan11g1931 . 37 326 RAV Transcription Factor Family AT3G25730 62.3 1.2e-87 320.9
Tan08g1679 . 37 146 RAV Transcription Factor Family AT3G25730 67.3 7.2e-37 152.1
Tan04g0897 . 1 362 RAV Transcription Factor Family AT1G68840 58.9 6.1e-111 398.3
Tan11g1931 . 1 329 RAV Transcription Factor Family AT1G68840 56.5 2.3e-94 343.2
Tan08g1679 . 22 156 RAV Transcription Factor Family AT1G68840 62.5 4.8e-39 159.5
Tan06g1845 . 75 195 RAV Transcription Factor Family AT1G68840 65.0 6.3e-39 159.1
Tan07g0156 . 39 147 RAV Transcription Factor Family AT1G68840 70.3 2.4e-38 157.1
Tan01g1185 . 56 164 RAV Transcription Factor Family AT1G68840 67.6 1.0e-36 151.8
Tan01g1186 . 56 164 RAV Transcription Factor Family AT1G68840 67.6 1.0e-36 151.8
Tan04g0897 . 6 359 RAV Transcription Factor Family AT3G25730 59.4 8.7e-99 357.8
Tan11g1931 . 37 326 RAV Transcription Factor Family AT3G25730 62.3 1.2e-87 320.9
Tan08g1679 . 37 146 RAV Transcription Factor Family AT3G25730 67.3 7.2e-37 152.1
Tan09g1552 . 41 342 RAV Transcription Factor Family AT1G51120 52.5 7.5e-85 311.6
Tan09g0896 . 52 279 RAV Transcription Factor Family AT1G51120 62.2 8.1e-79 291.6
Tan08g1679 . 1 182 RAV Transcription Factor Family AT3G11580 51.0 4.7e-43 172.2
Tan06g1845 . 74 190 RAV Transcription Factor Family AT3G11580 64.8 4.4e-41 165.6
Tan07g0156 . 38 147 RAV Transcription Factor Family AT3G11580 62.0 2.0e-38 156.8
Tan01g1185 . 48 164 RAV Transcription Factor Family AT3G11580 59.4 3.5e-38 156.0
Tan01g1186 . 48 164 RAV Transcription Factor Family AT3G11580 59.4 3.5e-38 156.0
Tan07g0156 . 39 155 RAV Transcription Factor Family AT4G01500 66.9 7.5e-42 168.7
Tan01g1185 . 56 177 RAV Transcription Factor Family AT4G01500 62.8 1.7e-38 157.5
Tan01g1186 . 56 177 RAV Transcription Factor Family AT4G01500 62.8 1.7e-38 157.5
Tan08g1679 . 1 162 RAV Transcription Factor Family AT2G36080 61.3 2.5e-49 192.6
Tan06g1845 . 74 212 RAV Transcription Factor Family AT2G36080 59.9 8.7e-42 167.5
Tan07g0156 . 38 149 RAV Transcription Factor Family AT2G36080 68.7 6.2e-40 161.4
Tan01g1185 . 55 169 RAV Transcription Factor Family AT2G36080 68.6 8.1e-40 161.0
Tan01g1186 . 55 169 RAV Transcription Factor Family AT2G36080 68.6 8.1e-40 161.0
Tan04g0897 . 191 320 RAV Transcription Factor Family AT2G36080 58.8 7.6e-38 154.5
Tan08g1679 . 34 234 RAV Transcription Factor Family AT5G06250 54.5 3.0e-49 193.0
Tan06g1845 . 75 183 RAV Transcription Factor Family AT5G06250 68.1 5.1e-41 165.6
Tan01g1185 . 56 164 RAV Transcription Factor Family AT5G06250 68.9 1.1e-40 164.5
Tan01g1186 . 56 164 RAV Transcription Factor Family AT5G06250 68.9 1.1e-40 164.5
Tan07g0156 . 39 147 RAV Transcription Factor Family AT5G06250 64.7 2.8e-39 159.8
Tan11g1931 . 173 284 RAV Transcription Factor Family AT5G06250 65.8 9.9e-37 151.4
Tan04g0897 . 197 305 RAV Transcription Factor Family AT5G06250 62.4 1.7e-36 150.6
Tan06g1845 . 74 326 RAV Transcription Factor Family AT2G46870 51.4 2.8e-59 226.5
Tan07g0156 . 22 154 RAV Transcription Factor Family AT2G46870 80.7 3.8e-56 216.1
Tan01g1185 . 55 165 RAV Transcription Factor Family AT2G46870 86.6 1.1e-52 204.5
Tan01g1186 . 55 165 RAV Transcription Factor Family AT2G46870 86.6 1.1e-52 204.5
Tan04g0897 . 197 309 RAV Transcription Factor Family AT2G46870 68.1 2.5e-39 160.2
Tan08g1679 . 34 145 RAV Transcription Factor Family AT2G46870 64.3 3.0e-37 153.3
Tan11g1931 . 175 289 RAV Transcription Factor Family AT2G46870 65.3 1.2e-36 151.4
Tan09g1552 . 45 342 RAV Transcription Factor Family AT1G50680 53.2 5.5e-85 312.0
Tan09g0896 . 52 327 RAV Transcription Factor Family AT1G50680 54.2 7.7e-79 291.6
Tan06g1845 . 72 318 RAV Transcription Factor Family AT3G61970 55.0 1.1e-55 214.5
Tan07g0156 . 32 155 RAV Transcription Factor Family AT3G61970 77.2 1.1e-52 204.5
Tan04g0897 . 197 309 RAV Transcription Factor Family AT3G61970 68.4 1.8e-39 160.6
Tan08g1679 . 34 145 RAV Transcription Factor Family AT3G61970 66.1 6.9e-39 158.7
Tan04g0897 . 1 361 RAV Transcription Factor Family AT1G13260 62.1 3.1e-107 386.0
Tan11g1931 . 1 328 RAV Transcription Factor Family AT1G13260 59.4 2.8e-92 336.3
Tan07g0156 . 40 153 RAV Transcription Factor Family AT1G13260 68.7 4.0e-38 156.4
Tan06g1845 . 76 183 RAV Transcription Factor Family AT1G13260 69.7 4.4e-37 152.9
Tan04g0897 . 1 362 RAV Transcription Factor Family AT1G68840 58.9 6.1e-111 398.3
Tan11g1931 . 1 329 RAV Transcription Factor Family AT1G68840 56.5 2.3e-94 343.2
Tan08g1679 . 22 156 RAV Transcription Factor Family AT1G68840 62.5 4.8e-39 159.5
Tan06g1845 . 75 195 RAV Transcription Factor Family AT1G68840 65.0 6.3e-39 159.1
Tan07g0156 . 39 147 RAV Transcription Factor Family AT1G68840 70.3 2.4e-38 157.1
Tan01g1185 . 56 164 RAV Transcription Factor Family AT1G68840 67.6 1.0e-36 151.8
Tan01g1186 . 56 164 RAV Transcription Factor Family AT1G68840 67.6 1.0e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28360 PF02362 B3 3.70E-24 CL0405 Tan TF