Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g1553 ATGGCGGAAAAGGACAGAGACGGTCATTCTGGTGTGCTCCATGGCAAGTATGAACTTGGTCGGCTTTTAGGGCATGGTACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACGGGGACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATTAAAGTAGGCATGATGGAGCAGGTCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATCGTCGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCGATGGAGCTTGTTCGAGGCGGGGAACTGTTCTCCAAAATTTCGAGAGGTCGATTGAGAGAAGATGCTGCTAGAGTTTACTTTCAGCAGCTGATTTCCGCGATCGACTTTTGCCACAGTCGTGGAGTTTATCATCGGGATCTCAAACCGGAGAATCTTCTTCTCGATGACGACGGGAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGCTGCACACAACTTGTGGCACGCCGGCGTATGTTGCGCCGGAAGTTATCGGGAAGAAGGGATACAACGGCGCCAAAGCTGATCTATGGTCATGCGGTGTCATCCTTTACGTTCTTCTCGCCGGATTTCTCCCATTTCAGGACGACAATATTGTGTCCATGTACAGGAAGATTTACAGAGGAGATTTCAAGTGCCCGCCGTGGTTCTCACCGGAATCCCGTCGACTAATCACCAAACTCCTCGATCCAAATCCGAGCACCAGAATTACAACTTCGAAGATCATGGAGTCCTCGTGGTTCAGAAAATCCATACCAAGGACTGTGATAACGAAAGAAGAGCGGGAATTCGACGAGAGCAACGAGAAATTGAAGCAGTCGGAGACGCTCAATGCCTTCCATATAATTTCATTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGAGAAGAGAAAGAGGAGCTGAGATTTGCGACGACAAGGCCGGCGAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCGGGGAAATTCAGCATAAAAAAAAGCGAATCAAGGGTCAGATTGCAGGGCCAAGAGTGCGGAAGAAAAGGGAAATTAGCGGTGGCGGCGGAGATCTTCGCCGTAACGCCGTCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGCGACACGTTAGAATACAACCAATTCTGCAGCAAAGAGCTCCGGCCGGCACTCAAAGACATTGTCTGGACATCACCAACGGAGAACTCCATGCCGGCTTGA 1293 49.73 MAEKDRDGHSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQVKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISRGRLREDAARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSPESRRLITKLLDPNPSTRITTSKIMESSWFRKSIPRTVITKEEREFDESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSIKKSESRVRLQGQECGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67372585 67373877 - Tan0000070.1 Tan09g1553 763896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g1553 430 CDD CIPK_C 301 416 - -
Tan09g1553 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Tan09g1553 430 FunFam Non-specific serine/threonine protein kinase 295 420 - -
Tan09g1553 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Tan09g1553 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Tan09g1553 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan09g1553 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Tan09g1553 430 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1553 430 CDD STKc_SnRK3 16 270 - -
Tan09g1553 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1553 430 SUPERFAMILY Protein kinase-like (PK-like) 13 285 IPR011009 -
Tan09g1553 430 Pfam NAF domain 298 357 IPR004041 GO:0007165(InterPro)
Tan09g1553 430 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Tan09g1553 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165(InterPro)
Tan09g1553 430 Gene3D Transferase(Phosphotransferase) domain 1 99 276 - -
Tan09g1553 430 Coils Coil 280 300 - -
Tan09g1553 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan09g1553 430 FunFam Non-specific serine/threonine protein kinase 7 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2507 Tan-Chr4:83996300 Tan09g1553 Tan-Chr9:67372585 1.10E-133 dispersed
Tan05g2507 Tan-Chr5:76422353 Tan09g1553 Tan-Chr9:67372585 1.50E-152 dispersed
Tan09g1553 Tan-Chr9:67372585 Tan10g0068 Tan-Chr10:1022351 3.10E-125 dispersed
Tan08g0370 Tan-Chr8:3345695 Tan09g1553 Tan-Chr9:67372585 1.50E-212 transposed
Tan01g3571 Tan-Chr1:100695837 Tan09g1553 Tan-Chr9:67372585 5.50E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68065 PF00069 Pkinase 8.60E-73 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g1553 - - - 0.0